Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20898
(609 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83840-2|CAB46206.1| 609|Homo sapiens X-ray repair complementin... 39 0.012
S38729-1|AAB22381.1| 609|Homo sapiens Ku autoantigen p70 subuni... 39 0.012
M32865-1|AAA36155.1| 609|Homo sapiens protein ( Human Ku protei... 39 0.012
J04611-1|AAA51733.1| 609|Homo sapiens G22P1 protein. 39 0.012
J04607-1|AAA61177.1| 609|Homo sapiens G22P1 protein. 39 0.012
CR542219-1|CAG47015.1| 609|Homo sapiens G22P1 protein. 39 0.012
BC072449-1|AAH72449.1| 609|Homo sapiens X-ray repair complement... 39 0.012
BC018259-1|AAH18259.1| 609|Homo sapiens X-ray repair complement... 39 0.012
BC012154-1|AAH12154.1| 609|Homo sapiens X-ray repair complement... 39 0.012
BC010034-1|AAH10034.1| 609|Homo sapiens X-ray repair complement... 39 0.012
BC008343-1|AAH08343.1| 609|Homo sapiens XRCC6 protein protein. 39 0.012
AY870329-1|AAW34364.1| 609|Homo sapiens thyroid autoantigen 70k... 39 0.012
AF110315-1|AAD13107.1| 388|Homo sapiens unknown protein. 30 5.5
>Z83840-2|CAB46206.1| 609|Homo sapiens X-ray repair complementing
defective repair in Chinese hamster cells 6 (Ku auto
protein.
Length = 609
Score = 39.1 bits (87), Expect = 0.012
Identities = 18/65 (27%), Positives = 37/65 (56%)
Frame = +2
Query: 32 KIEDVTKLILNECDRHLATAQLIFEIGNNVSIGISIYKLLKSNIEPKKVYLSNETNAVVT 211
K+ED+ + + + R A ++L ++ ++ I + IY L++ ++P + L ETN V
Sbjct: 238 KLEDLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVK 297
Query: 212 SDTKT 226
+ T+T
Sbjct: 298 TKTRT 302
>S38729-1|AAB22381.1| 609|Homo sapiens Ku autoantigen p70 subunit
protein.
Length = 609
Score = 39.1 bits (87), Expect = 0.012
Identities = 18/65 (27%), Positives = 37/65 (56%)
Frame = +2
Query: 32 KIEDVTKLILNECDRHLATAQLIFEIGNNVSIGISIYKLLKSNIEPKKVYLSNETNAVVT 211
K+ED+ + + + R A ++L ++ ++ I + IY L++ ++P + L ETN V
Sbjct: 238 KLEDLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVK 297
Query: 212 SDTKT 226
+ T+T
Sbjct: 298 TKTRT 302
>M32865-1|AAA36155.1| 609|Homo sapiens protein ( Human Ku protein
subunit mRNA, complete cds. ).
Length = 609
Score = 39.1 bits (87), Expect = 0.012
Identities = 18/65 (27%), Positives = 37/65 (56%)
Frame = +2
Query: 32 KIEDVTKLILNECDRHLATAQLIFEIGNNVSIGISIYKLLKSNIEPKKVYLSNETNAVVT 211
K+ED+ + + + R A ++L ++ ++ I + IY L++ ++P + L ETN V
Sbjct: 238 KLEDLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVK 297
Query: 212 SDTKT 226
+ T+T
Sbjct: 298 TKTRT 302
>J04611-1|AAA51733.1| 609|Homo sapiens G22P1 protein.
Length = 609
Score = 39.1 bits (87), Expect = 0.012
Identities = 18/65 (27%), Positives = 37/65 (56%)
Frame = +2
Query: 32 KIEDVTKLILNECDRHLATAQLIFEIGNNVSIGISIYKLLKSNIEPKKVYLSNETNAVVT 211
K+ED+ + + + R A ++L ++ ++ I + IY L++ ++P + L ETN V
Sbjct: 238 KLEDLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVK 297
Query: 212 SDTKT 226
+ T+T
Sbjct: 298 TKTRT 302
>J04607-1|AAA61177.1| 609|Homo sapiens G22P1 protein.
Length = 609
Score = 39.1 bits (87), Expect = 0.012
Identities = 18/65 (27%), Positives = 37/65 (56%)
Frame = +2
Query: 32 KIEDVTKLILNECDRHLATAQLIFEIGNNVSIGISIYKLLKSNIEPKKVYLSNETNAVVT 211
K+ED+ + + + R A ++L ++ ++ I + IY L++ ++P + L ETN V
Sbjct: 238 KLEDLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVK 297
Query: 212 SDTKT 226
+ T+T
Sbjct: 298 TKTRT 302
>CR542219-1|CAG47015.1| 609|Homo sapiens G22P1 protein.
Length = 609
Score = 39.1 bits (87), Expect = 0.012
Identities = 18/65 (27%), Positives = 37/65 (56%)
Frame = +2
Query: 32 KIEDVTKLILNECDRHLATAQLIFEIGNNVSIGISIYKLLKSNIEPKKVYLSNETNAVVT 211
K+ED+ + + + R A ++L ++ ++ I + IY L++ ++P + L ETN V
Sbjct: 238 KLEDLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVK 297
Query: 212 SDTKT 226
+ T+T
Sbjct: 298 TKTRT 302
>BC072449-1|AAH72449.1| 609|Homo sapiens X-ray repair complementing
defective repair in Chinese hamster cells 6 (Ku auto
protein.
Length = 609
Score = 39.1 bits (87), Expect = 0.012
Identities = 18/65 (27%), Positives = 37/65 (56%)
Frame = +2
Query: 32 KIEDVTKLILNECDRHLATAQLIFEIGNNVSIGISIYKLLKSNIEPKKVYLSNETNAVVT 211
K+ED+ + + + R A ++L ++ ++ I + IY L++ ++P + L ETN V
Sbjct: 238 KLEDLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVK 297
Query: 212 SDTKT 226
+ T+T
Sbjct: 298 TKTRT 302
>BC018259-1|AAH18259.1| 609|Homo sapiens X-ray repair complementing
defective repair in Chinese hamster cells 6 (Ku auto
protein.
Length = 609
Score = 39.1 bits (87), Expect = 0.012
Identities = 18/65 (27%), Positives = 37/65 (56%)
Frame = +2
Query: 32 KIEDVTKLILNECDRHLATAQLIFEIGNNVSIGISIYKLLKSNIEPKKVYLSNETNAVVT 211
K+ED+ + + + R A ++L ++ ++ I + IY L++ ++P + L ETN V
Sbjct: 238 KLEDLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVK 297
Query: 212 SDTKT 226
+ T+T
Sbjct: 298 TKTRT 302
>BC012154-1|AAH12154.1| 609|Homo sapiens X-ray repair complementing
defective repair in Chinese hamster cells 6 (Ku auto
protein.
Length = 609
Score = 39.1 bits (87), Expect = 0.012
Identities = 18/65 (27%), Positives = 37/65 (56%)
Frame = +2
Query: 32 KIEDVTKLILNECDRHLATAQLIFEIGNNVSIGISIYKLLKSNIEPKKVYLSNETNAVVT 211
K+ED+ + + + R A ++L ++ ++ I + IY L++ ++P + L ETN V
Sbjct: 238 KLEDLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVK 297
Query: 212 SDTKT 226
+ T+T
Sbjct: 298 TKTRT 302
>BC010034-1|AAH10034.1| 609|Homo sapiens X-ray repair complementing
defective repair in Chinese hamster cells 6 (Ku auto
protein.
Length = 609
Score = 39.1 bits (87), Expect = 0.012
Identities = 18/65 (27%), Positives = 37/65 (56%)
Frame = +2
Query: 32 KIEDVTKLILNECDRHLATAQLIFEIGNNVSIGISIYKLLKSNIEPKKVYLSNETNAVVT 211
K+ED+ + + + R A ++L ++ ++ I + IY L++ ++P + L ETN V
Sbjct: 238 KLEDLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVK 297
Query: 212 SDTKT 226
+ T+T
Sbjct: 298 TKTRT 302
>BC008343-1|AAH08343.1| 609|Homo sapiens XRCC6 protein protein.
Length = 609
Score = 39.1 bits (87), Expect = 0.012
Identities = 18/65 (27%), Positives = 37/65 (56%)
Frame = +2
Query: 32 KIEDVTKLILNECDRHLATAQLIFEIGNNVSIGISIYKLLKSNIEPKKVYLSNETNAVVT 211
K+ED+ + + + R A ++L ++ ++ I + IY L++ ++P + L ETN V
Sbjct: 238 KLEDLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVK 297
Query: 212 SDTKT 226
+ T+T
Sbjct: 298 TKTRT 302
>AY870329-1|AAW34364.1| 609|Homo sapiens thyroid autoantigen 70kDa
(Ku antigen) protein.
Length = 609
Score = 39.1 bits (87), Expect = 0.012
Identities = 18/65 (27%), Positives = 37/65 (56%)
Frame = +2
Query: 32 KIEDVTKLILNECDRHLATAQLIFEIGNNVSIGISIYKLLKSNIEPKKVYLSNETNAVVT 211
K+ED+ + + + R A ++L ++ ++ I + IY L++ ++P + L ETN V
Sbjct: 238 KLEDLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVK 297
Query: 212 SDTKT 226
+ T+T
Sbjct: 298 TKTRT 302
>AF110315-1|AAD13107.1| 388|Homo sapiens unknown protein.
Length = 388
Score = 30.3 bits (65), Expect = 5.5
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +1
Query: 445 WFLKNCSFLFPNEKSIEGSTTVSRQCTKHVLK 540
WFLKN +++ K + S T+ ++C +++ K
Sbjct: 355 WFLKNATYICQRVKRVSHSHTLKQKCLENICK 386
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,732,058
Number of Sequences: 237096
Number of extensions: 1379353
Number of successful extensions: 2702
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2702
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6466646650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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