Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20898
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025724-8|AAG23381.1|  460|Caenorhabditis elegans Hypothetical ...    32   0.28 
U40797-2|AAB37549.2|  429|Caenorhabditis elegans Saposin-like pr...    28   6.0  
AC006830-2|AAK68611.2|  293|Caenorhabditis elegans Serpentine re...    28   6.0  

>AC025724-8|AAG23381.1|  460|Caenorhabditis elegans Hypothetical
           protein Y67D8C.2 protein.
          Length = 460

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
 Frame = +2

Query: 5   KNSLPKSVWKIEDVTKL----ILNECDRHLATAQLIFEIGNNVSIGISIYKLLKSNIEPK 172
           KN +   V K+E+  +L    I+  C   +    LI E    ++  +++     SN+E +
Sbjct: 35  KNFIISYVRKLEENKELYSAGIVGTCMPDIFRKPLILETPTAITHELTLQWTTVSNVEEQ 94

Query: 173 KVYLSNETNAVVTSDTKTTKVL 238
           KV +++E + +   DTKT K L
Sbjct: 95  KVMVTDENSTMSEVDTKTLKDL 116


>U40797-2|AAB37549.2|  429|Caenorhabditis elegans Saposin-like
           protein family protein10, isoform b protein.
          Length = 429

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +2

Query: 203 VVTSDTKTTKVLVKPDTVWILIGLKNKKCLYLSLSCFTVKNMAMRL*HSLIMNLK 367
           V  S+ +  KV  + D  W    +KN K   L++SCF  K +   +   +I N K
Sbjct: 227 VEASNEEKEKVENEVDAFWNGAAMKNNKGQTLAMSCFECKFVVEDMQTDMITNRK 281


>AC006830-2|AAK68611.2|  293|Caenorhabditis elegans Serpentine
           receptor, class sx protein40 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 378 VIYSFKFIISECYNLIAIFLTVKQLRLK 295
           VIY F FII   +NLI + + +K   LK
Sbjct: 16  VIYGFLFIIGFFFNLIFLIIILKNKNLK 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,682,361
Number of Sequences: 27780
Number of extensions: 251758
Number of successful extensions: 659
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)