Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20898
         (609 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16970.1 68414.m02061 Ku70-like protein identical to Ku70-lik...    44   8e-05
At5g20940.1 68418.m02488 glycosyl hydrolase family 3 protein bet...    29   3.2  
At1g59540.1 68414.m06694 kinesin motor protein-related similar t...    28   5.6  
At1g23090.1 68414.m02887 sulfate transporter, putative similar t...    28   5.6  
At1g03010.1 68414.m00273 phototropic-responsive NPH3 family prot...    27   7.4  
At5g57130.1 68418.m07135 expressed protein                             27   9.7  
At1g63360.1 68414.m07162 disease resistance protein (CC-NBS-LRR ...    27   9.7  

>At1g16970.1 68414.m02061 Ku70-like protein identical to Ku70-like
           protein GI:12006424 from [Arabidopsis thaliana];
           contains Pfam profiles PF03731: Ku70/Ku80 N-terminal
           alpha/beta domain, PF02735: Ku70/Ku80 beta-barrel
           domain, PF03730: Ku70/Ku80 C-terminal arm, and PF02037:
           SAP domain; contains TIGRfam profile TIGR00578:
           ATP-dependent DNA helicase ii, 70 kDa subunit
          Length = 621

 Score = 44.0 bits (99), Expect = 8e-05
 Identities = 25/71 (35%), Positives = 39/71 (54%)
 Frame = +1

Query: 292 LLKSELLHCQEYGNEIIAFTDNEFKTINNPFGPAKLKLLGFKPETFLCKEKWFLKNCSFL 471
           +++  +   Q Y N+ I FT  E   +        L+LLGFKP + L K+   LK  +FL
Sbjct: 321 IMQDPIQRIQPYKNQNIMFTVEELSQVKR-ISTGHLRLLGFKPLSCL-KDYHNLKPSTFL 378

Query: 472 FPNEKSIEGST 504
           +P++K + GST
Sbjct: 379 YPSDKEVIGST 389


>At5g20940.1 68418.m02488 glycosyl hydrolase family 3 protein
           beta-glucosidase, common nasturtium, PIR:T10521
          Length = 626

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +2

Query: 110 GNNVSIGISIYKLLKSNIEPKK--VYLSN-ETNAVVTSD 217
           GNN++IG +I   +K  ++PK   +Y  N +TN V   D
Sbjct: 464 GNNLTIGTTILAAVKKTVDPKTQVIYNQNPDTNFVKAGD 502


>At1g59540.1 68414.m06694 kinesin motor protein-related similar to
           kinesin motor protein (kin2) GI:2062751 from (Ustilago
           maydis)
          Length = 823

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 23  SVWKIEDVTKLILNECDRHLATAQLIFE-IGNNVSIGISIYKLLKSNI 163
           S+WK+ED    +    D  + TA   F+ + +  S   S+Y+LL  +I
Sbjct: 20  SLWKVEDNRISLHKSLDTPITTASHAFDHVFDESSTNASVYELLTKDI 67


>At1g23090.1 68414.m02887 sulfate transporter, putative similar to
           sulfate transporter [Arabidopsis thaliana] GI:2285885;
           contains Pfam profiles PF00916: Sulfate transporter
           family, PF01740: STAS domain
          Length = 631

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +2

Query: 26  VWKIEDVTKLILNECDRHLATAQLIFEIGNNVSIGISIYKLLKSNIEPKKVYLSN 190
           +WKI+    L++  C        L  + G  +++G+S++K+L     PK V + N
Sbjct: 433 IWKIDKFDFLVML-C-AFFGVIFLSVQNGLAIAVGLSLFKILMQVTRPKMVIMGN 485


>At1g03010.1 68414.m00273 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 634

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -2

Query: 527 LVHCLETVVEPSIDFSLGNKKEQFFKNHFSLQRKVSGLNPNSFSFAGPN 381
           L HC ET++  S D +L N+      N+   ++  SGL    +SF+G N
Sbjct: 150 LHHC-ETLIPVSEDLNLVNRLIIAVANNACKEQLTSGLLKLDYSFSGTN 197


>At5g57130.1 68418.m07135 expressed protein
          Length = 920

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 485 FSLGNKKEQFFKNHFSLQRKVSGLNPNSFSFAGPN 381
           FS  N  +Q  ++H S+ R     NP  F+F  PN
Sbjct: 101 FSSPNSPDQQQQHHNSINRLHHYQNPKDFNFINPN 135


>At1g63360.1 68414.m07162 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 884

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 18/68 (26%), Positives = 35/68 (51%)
 Frame = +1

Query: 316 CQEYGNEIIAFTDNEFKTINNPFGPAKLKLLGFKPETFLCKEKWFLKNCSFLFPNEKSIE 495
           C+   + I+ F +  F T+++     KLK + ++P  FLC E+  ++ C    PN + + 
Sbjct: 785 CEGEESGILPFPELNFLTLHDL---PKLKKIYWRPLPFLCLEEINIREC----PNLRKLP 837

Query: 496 GSTTVSRQ 519
             +T  +Q
Sbjct: 838 LDSTSGKQ 845


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,659,870
Number of Sequences: 28952
Number of extensions: 221293
Number of successful extensions: 596
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)