Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20886
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    27   1.5  
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ...    25   3.4  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   4.5  
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    25   5.9  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    24   7.8  

>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 182 FEPPKEEHHDVRNAKLNRP 238
           F+ PKE+H   R+ KL+RP
Sbjct: 7   FQDPKEKHRIQRDVKLSRP 25


>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +1

Query: 256 IYSFQLTAVLSITHRATGMML--XTYAXALG 342
           IY  QLT  LS  HR TG ++    YA A+G
Sbjct: 66  IYEPQLTWYLSSLHRITGCVVAGTLYAFAMG 96


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 220 IPHIMMFFFWGLKLNKRNFRGIRG 149
           +P   +FFFWG ++ +R+    +G
Sbjct: 524 VPIPFIFFFWGRRIRQRSPHAYKG 547


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +2

Query: 116 ARLNSVNYAQAASNAPKITFVKFEPPKEEHHDVRNAKLNRPLSP 247
           + LN  +  +++ N  K  F     P+E   + + A    PLSP
Sbjct: 43  SNLNEKSVEESSKNETKEQFNSSSIPRESESEGKTASNTSPLSP 86


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 311 IPVALCVIESTAVSWKEYI-LNEEKV 237
           +P+A+C I+S+  S  EY+ L + KV
Sbjct: 16  VPLAICYIDSSTSSHDEYLTLLQSKV 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,445,764
Number of Sequences: 5004
Number of extensions: 24456
Number of successful extensions: 56
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)