Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20886
         (405 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1582 + 28007169-28007188,28007278-28007312,28007945-280081...    29   1.4  
03_05_0481 + 24764283-24766109                                         29   1.8  
01_03_0071 + 12203227-12203368,12203551-12203703,12204622-122046...    26   9.9  

>08_02_1582 +
           28007169-28007188,28007278-28007312,28007945-28008130,
           28008783-28008962,28009290-28009474,28009593-28009688,
           28009888-28009933,28010054-28010160,28010893-28010994,
           28011080-28011614,28012296-28012366,28012747-28012830
          Length = 548

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 116 ARLNSVNYAQAASNAPKITFVKFEPPKEEHHDVRNAKLNRP 238
           A LN  N+ +   +APK+  + FEPP ++   + N  L RP
Sbjct: 349 AVLNLNNFFRGKIDAPKLKNLLFEPPHQDEL-ISNPSLKRP 388


>03_05_0481 + 24764283-24766109
          Length = 608

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 65  CTRLGSRSVLASLSRFPAR-LNSVNYAQAASNAPKITFVKFEPPKEEHHDVRNAKLNRPL 241
           C+    R   ++  RF AR ++SV +A AAS+AP    V F P  +       + +  P 
Sbjct: 19  CSTTAGRRGASNSVRFSARAVSSVPHAAAASSAPAFLPVPFVPGADAPSPSGKSAIGVPK 78

Query: 242 SP 247
           +P
Sbjct: 79  AP 80


>01_03_0071 +
           12203227-12203368,12203551-12203703,12204622-12204683,
           12204749-12204830,12206029-12206126,12206240-12206657,
           12206793-12206915,12207159-12207178
          Length = 365

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +2

Query: 122 LNSVNYAQAASNAPKITFVKFEPPKEEHHDVRNAKL 229
           L+   Y + ++  PK+    +  PK  HH  +N  +
Sbjct: 235 LSQTRYNEHSNKQPKLLTANYHGPKNMHHHHKNTNM 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,124,410
Number of Sequences: 37544
Number of extensions: 150679
Number of successful extensions: 347
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)