Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20886
(405 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U57877-1|AAB41838.1| 169|Homo sapiens integral membrane protein... 34 0.16
D49737-1|BAA31998.1| 169|Homo sapiens cytochrome b large subuni... 34 0.16
CR457102-1|CAG33383.1| 169|Homo sapiens SDHC protein. 34 0.16
BC066329-1|AAH66329.1| 169|Homo sapiens succinate dehydrogenase... 34 0.16
BC033626-1|AAH33626.1| 169|Homo sapiens succinate dehydrogenase... 34 0.16
BC020808-1|AAH20808.1| 169|Homo sapiens succinate dehydrogenase... 34 0.16
AL592295-2|CAH70271.1| 169|Homo sapiens succinate dehydrogenase... 34 0.16
AF039594-1|AAC27993.1| 169|Homo sapiens succinate dehydrogenase... 34 0.16
AB201252-1|BAE46977.1| 116|Homo sapiens succinate dehydrogenase... 30 2.6
BC020956-1|AAH20956.1| 924|Homo sapiens SETD5 protein protein. 29 4.5
AK025478-1|BAB15144.1| 603|Homo sapiens protein ( Homo sapiens ... 29 4.5
AK001569-1|BAA91762.1| 924|Homo sapiens protein ( Homo sapiens ... 29 4.5
AF081495-1|AAC31940.1| 135|Homo sapiens integral membrane prote... 29 4.5
AB211234-1|BAE46978.1| 135|Homo sapiens succinate dehydrogenase... 29 4.5
AB051544-1|BAB21848.1| 1409|Homo sapiens KIAA1757 protein protein. 29 4.5
>U57877-1|AAB41838.1| 169|Homo sapiens integral membrane protein
CII-3 protein.
Length = 169
Score = 34.3 bits (75), Expect = 0.16
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 256 IYSFQLTAVLSITHRATGMMLXTYAXALGIXALVSQNDISHYITMIE 396
IYS+ L +SI HR TG+ L G+ AL+ + Y+ +++
Sbjct: 58 IYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVK 104
>D49737-1|BAA31998.1| 169|Homo sapiens cytochrome b large subunit
of complex II protein.
Length = 169
Score = 34.3 bits (75), Expect = 0.16
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 256 IYSFQLTAVLSITHRATGMMLXTYAXALGIXALVSQNDISHYITMIE 396
IYS+ L +SI HR TG+ L G+ AL+ + Y+ +++
Sbjct: 58 IYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVK 104
>CR457102-1|CAG33383.1| 169|Homo sapiens SDHC protein.
Length = 169
Score = 34.3 bits (75), Expect = 0.16
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 256 IYSFQLTAVLSITHRATGMMLXTYAXALGIXALVSQNDISHYITMIE 396
IYS+ L +SI HR TG+ L G+ AL+ + Y+ +++
Sbjct: 58 IYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVK 104
>BC066329-1|AAH66329.1| 169|Homo sapiens succinate dehydrogenase
complex, subunit C, integral membrane protein, 15kDa
protein.
Length = 169
Score = 34.3 bits (75), Expect = 0.16
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 256 IYSFQLTAVLSITHRATGMMLXTYAXALGIXALVSQNDISHYITMIE 396
IYS+ L +SI HR TG+ L G+ AL+ + Y+ +++
Sbjct: 58 IYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVK 104
>BC033626-1|AAH33626.1| 169|Homo sapiens succinate dehydrogenase
complex, subunit C, integral membrane protein, 15kDa
protein.
Length = 169
Score = 34.3 bits (75), Expect = 0.16
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 256 IYSFQLTAVLSITHRATGMMLXTYAXALGIXALVSQNDISHYITMIE 396
IYS+ L +SI HR TG+ L G+ AL+ + Y+ +++
Sbjct: 58 IYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVK 104
>BC020808-1|AAH20808.1| 169|Homo sapiens succinate dehydrogenase
complex, subunit C, integral membrane protein, 15kDa
protein.
Length = 169
Score = 34.3 bits (75), Expect = 0.16
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 256 IYSFQLTAVLSITHRATGMMLXTYAXALGIXALVSQNDISHYITMIE 396
IYS+ L +SI HR TG+ L G+ AL+ + Y+ +++
Sbjct: 58 IYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVK 104
>AL592295-2|CAH70271.1| 169|Homo sapiens succinate dehydrogenase
complex, subunit C, integral membrane protein, 15kDa
protein.
Length = 169
Score = 34.3 bits (75), Expect = 0.16
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 256 IYSFQLTAVLSITHRATGMMLXTYAXALGIXALVSQNDISHYITMIE 396
IYS+ L +SI HR TG+ L G+ AL+ + Y+ +++
Sbjct: 58 IYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVK 104
>AF039594-1|AAC27993.1| 169|Homo sapiens succinate dehydrogenase
subunit C protein.
Length = 169
Score = 34.3 bits (75), Expect = 0.16
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 256 IYSFQLTAVLSITHRATGMMLXTYAXALGIXALVSQNDISHYITMIE 396
IYS+ L +SI HR TG+ L G+ AL+ + Y+ +++
Sbjct: 58 IYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVK 104
>AB201252-1|BAE46977.1| 116|Homo sapiens succinate dehydrogenase
complex, subunit C delta2+3 alternative splicing varian
protein.
Length = 116
Score = 30.3 bits (65), Expect = 2.6
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 256 IYSFQLTAVLSITHRATGMMLXTYAXALGIXALVSQNDISHYITMIE 396
+ S+ L +SI HR TG+ L G+ AL+ + Y+ +++
Sbjct: 5 LLSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVK 51
>BC020956-1|AAH20956.1| 924|Homo sapiens SETD5 protein protein.
Length = 924
Score = 29.5 bits (63), Expect = 4.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 206 HDVRNAKLNRPLSPHLKYTPSN*LLCSLSHIE 301
H V+ + P SPH K++PS+ S+SH+E
Sbjct: 595 HGVQGSSARTPSSPHKKFSPSH---SSMSHLE 623
>AK025478-1|BAB15144.1| 603|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21825 fis, clone HEP01348. ).
Length = 603
Score = 29.5 bits (63), Expect = 4.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 206 HDVRNAKLNRPLSPHLKYTPSN*LLCSLSHIE 301
H V+ + P SPH K++PS+ S+SH+E
Sbjct: 274 HGVQGSSARTPSSPHKKFSPSH---SSMSHLE 302
>AK001569-1|BAA91762.1| 924|Homo sapiens protein ( Homo sapiens
cDNA FLJ10707 fis, clone NT2RP3000859. ).
Length = 924
Score = 29.5 bits (63), Expect = 4.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 206 HDVRNAKLNRPLSPHLKYTPSN*LLCSLSHIE 301
H V+ + P SPH K++PS+ S+SH+E
Sbjct: 595 HGVQGSSARTPSSPHKKFSPSH---SSMSHLE 623
>AF081495-1|AAC31940.1| 135|Homo sapiens integral membrane protein
CII-3b protein.
Length = 135
Score = 29.5 bits (63), Expect = 4.5
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 256 IYSFQLTAVLSITHRATGMMLXTYAXALGIXALVSQNDISHYITMIE 396
I ++ L +SI HR TG+ L G+ AL+ + Y+ +++
Sbjct: 24 IRNWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVK 70
>AB211234-1|BAE46978.1| 135|Homo sapiens succinate dehydrogenase
complex, subunit C delta3 alternative splicing variant
protein.
Length = 135
Score = 29.5 bits (63), Expect = 4.5
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 256 IYSFQLTAVLSITHRATGMMLXTYAXALGIXALVSQNDISHYITMIE 396
I ++ L +SI HR TG+ L G+ AL+ + Y+ +++
Sbjct: 24 IRNWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVK 70
>AB051544-1|BAB21848.1| 1409|Homo sapiens KIAA1757 protein protein.
Length = 1409
Score = 29.5 bits (63), Expect = 4.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 206 HDVRNAKLNRPLSPHLKYTPSN*LLCSLSHIE 301
H V+ + P SPH K++PS+ S+SH+E
Sbjct: 1080 HGVQGSSARTPSSPHKKFSPSH---SSMSHLE 1108
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,260,134
Number of Sequences: 237096
Number of extensions: 917156
Number of successful extensions: 1478
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1478
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2985693880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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