Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20886
         (405 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY835432-1|AAX37359.1|  467|Caenorhabditis elegans bZIP transcri...    31   0.42 
AF016440-1|ABA54419.1|  467|Caenorhabditis elegans Abnormal ever...    31   0.42 
AF016655-12|AAK31438.3| 1143|Caenorhabditis elegans Guanylyl cyc...    29   1.3  
AF003151-3|ABJ99067.1|  247|Caenorhabditis elegans Hypothetical ...    27   3.9  
U80955-10|AAN65297.2|  475|Caenorhabditis elegans Hypothetical p...    26   9.0  
U80955-9|AAN65296.1|  863|Caenorhabditis elegans Hypothetical pr...    26   9.0  
U80955-8|AAN65295.1|  881|Caenorhabditis elegans Hypothetical pr...    26   9.0  

>AY835432-1|AAX37359.1|  467|Caenorhabditis elegans bZIP
           transcription factor FOS-1a protein.
          Length = 467

 Score = 30.7 bits (66), Expect = 0.42
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 188 PPKEEHHDVRNAKL-NRPLSPHLKYTPSN 271
           PP++ HH +   +  N PL+P   Y PSN
Sbjct: 44  PPRQHHHQIHQQQTDNSPLTPCTPYYPSN 72


>AF016440-1|ABA54419.1|  467|Caenorhabditis elegans Abnormal
           eversion of vulva protein5, isoform b protein.
          Length = 467

 Score = 30.7 bits (66), Expect = 0.42
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 188 PPKEEHHDVRNAKL-NRPLSPHLKYTPSN 271
           PP++ HH +   +  N PL+P   Y PSN
Sbjct: 44  PPRQHHHQIHQQQTDNSPLTPCTPYYPSN 72


>AF016655-12|AAK31438.3| 1143|Caenorhabditis elegans Guanylyl
           cyclase protein 19 protein.
          Length = 1143

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +1

Query: 235 STFSSFKIYSFQLTAVLSITHRATGMMLXTYAXALGIXALVSQNDISHYITM-IEGPQ 405
           +TFS++ I+      VLS  H A+ ++   Y   + +  L  +N ++ ++ M I+GP+
Sbjct: 538 NTFSNYSIFYLDKEPVLSTAHPASNLIRTDYDTFVRLRKLDHEN-VNKFVGMSIDGPE 594


>AF003151-3|ABJ99067.1|  247|Caenorhabditis elegans Hypothetical
           protein D1007.13b protein.
          Length = 247

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +2

Query: 65  CTRLGSRSVLASLSRFPARLNSVNYAQAASNAPKITFVKFEPPKE 199
           C + G+R ++     +P +  + N+ Q  S  P  T  + +PP +
Sbjct: 32  CQQCGNRRIVQQYRSYPQKKFNFNFEQFFSRFPGFTSPQRQPPSQ 76


>U80955-10|AAN65297.2|  475|Caenorhabditis elegans Hypothetical
           protein T04C9.1c protein.
          Length = 475

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 134 NYAQAASNAPKITFVKFEPPKEEHH 208
           NY +   + PK +F    PPK +HH
Sbjct: 245 NYDKIFKSKPKSSFGSAVPPKPDHH 269


>U80955-9|AAN65296.1|  863|Caenorhabditis elegans Hypothetical
           protein T04C9.1b protein.
          Length = 863

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 134 NYAQAASNAPKITFVKFEPPKEEHH 208
           NY +   + PK +F    PPK +HH
Sbjct: 585 NYDKIFKSKPKSSFGSAVPPKPDHH 609


>U80955-8|AAN65295.1|  881|Caenorhabditis elegans Hypothetical
           protein T04C9.1a protein.
          Length = 881

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 134 NYAQAASNAPKITFVKFEPPKEEHH 208
           NY +   + PK +F    PPK +HH
Sbjct: 585 NYDKIFKSKPKSSFGSAVPPKPDHH 609


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,988,429
Number of Sequences: 27780
Number of extensions: 134204
Number of successful extensions: 349
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)