Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20886
         (405 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17960.1 68418.m02106 DC1 domain-containing protein contains ...    27   3.6  
At5g53120.3 68418.m06603 spermidine synthase, putative / putresc...    27   4.8  
At5g53120.2 68418.m06602 spermidine synthase, putative / putresc...    27   4.8  
At5g53120.1 68418.m06601 spermidine synthase, putative / putresc...    27   4.8  
At4g28990.1 68417.m04143 RNA-binding protein-related contains we...    27   4.8  
At3g13760.1 68416.m01736 DC1 domain-containing protein contains ...    27   4.8  
At2g38940.1 68415.m04785 phosphate transporter (PT2) identical t...    26   8.3  

>At5g17960.1 68418.m02106 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 599

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 377 CEISFCDTNAXIPSAXAYVXNIIPVALCVIEST 279
           CE S C   A IPS   Y  +  P+ LC  E T
Sbjct: 470 CEYSICYECATIPSELHYKYDKHPLTLCYGEDT 502


>At5g53120.3 68418.m06603 spermidine synthase, putative / putrescine
           aminopropyltransferase, putative similar to SP|O82147
           Spermidine synthase (EC 2.5.1.16) (Putrescine
           aminopropyltransferase) (SPDSY) {Coffea arabica};
           contains Pfam profile PF01564: Spermine/spermidine
           synthase
          Length = 359

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = -2

Query: 389 MVM*CEISFCDTNAXIPSAXAYVXNIIPVALCVIESTAVSWKEYILNEEKVDDLA*H 219
           M+  C  +F   +    S   Y   +I   LC  E  AV +K  I   EK+D    H
Sbjct: 271 MISICRQTFKSVHYAWSSVPTYPSGVIGFVLCSTEGPAVDFKNPINPIEKLDGAMTH 327


>At5g53120.2 68418.m06602 spermidine synthase, putative / putrescine
           aminopropyltransferase, putative similar to SP|O82147
           Spermidine synthase (EC 2.5.1.16) (Putrescine
           aminopropyltransferase) (SPDSY) {Coffea arabica};
           contains Pfam profile PF01564: Spermine/spermidine
           synthase
          Length = 359

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = -2

Query: 389 MVM*CEISFCDTNAXIPSAXAYVXNIIPVALCVIESTAVSWKEYILNEEKVDDLA*H 219
           M+  C  +F   +    S   Y   +I   LC  E  AV +K  I   EK+D    H
Sbjct: 271 MISICRQTFKSVHYAWSSVPTYPSGVIGFVLCSTEGPAVDFKNPINPIEKLDGAMTH 327


>At5g53120.1 68418.m06601 spermidine synthase, putative / putrescine
           aminopropyltransferase, putative similar to SP|O82147
           Spermidine synthase (EC 2.5.1.16) (Putrescine
           aminopropyltransferase) (SPDSY) {Coffea arabica};
           contains Pfam profile PF01564: Spermine/spermidine
           synthase
          Length = 359

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = -2

Query: 389 MVM*CEISFCDTNAXIPSAXAYVXNIIPVALCVIESTAVSWKEYILNEEKVDDLA*H 219
           M+  C  +F   +    S   Y   +I   LC  E  AV +K  I   EK+D    H
Sbjct: 271 MISICRQTFKSVHYAWSSVPTYPSGVIGFVLCSTEGPAVDFKNPINPIEKLDGAMTH 327


>At4g28990.1 68417.m04143 RNA-binding protein-related contains weak
           similarity to Swiss-Prot:Q01844 RNA-binding protein EWS
           (EWS oncogene)(Ewing sarcoma breakpoint region 1
           protein) [Homo sapiens]
          Length = 347

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 182 FEPPKEEHHDVRNAKLNRPLSPHLKYTPSN*LLCSLSHIEQL 307
           + PP+ +H   R+ + +RP     +Y PS  +    +H E L
Sbjct: 222 YPPPRHDHPTWRDRERDRPHYSDHEYPPSRRIASDWAHTEPL 263


>At3g13760.1 68416.m01736 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 398 PSIMVM*CEISFCDTNAXIPSAXAYVXNIIPVALCVIES-TAVSWKEYILNEEKVD 234
           P I    C+ + C T A IP+   Y  +  P+ LC  ES  +  W E  + E+K+D
Sbjct: 498 PHIKCTKCDFAMCYTCATIPNEVHYKFDEHPLTLCHGESRKSKYWCE--VCEKKLD 551


>At2g38940.1 68415.m04785 phosphate transporter (PT2) identical to
           phosphate transporter (AtPT2) [Arabidopsis thaliana]
           GI:1502430
          Length = 534

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +2

Query: 80  SRSVLASLSRFPARLNSVNYAQAASNAPKITFVKFEPPKEEHHDVRNAK 226
           SRS +   +R+ A L + +  QAAS+  K+  V+ EP +++  ++   K
Sbjct: 232 SRSKMPETARYTA-LVAKDAKQAASDMSKVLQVEIEPEQQKLEEISKEK 279


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,450,941
Number of Sequences: 28952
Number of extensions: 123344
Number of successful extensions: 312
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)