Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20881
         (355 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   2.0  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    26   2.0  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    25   3.4  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.5  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    25   4.5  
SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6 |Schizosacch...    24   7.9  

>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +2

Query: 233  LFN*KQDLIKEAYKTHLRQWAKEHEGWSVAVEK 331
            ++N   D I++  ++  R+W    EGW+  + K
Sbjct: 1289 VYNGPYDKIRDYRQSKWREWLNSDEGWTQGLSK 1321


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 185 AAWTLQGHSMRFRKVGLFN*KQDLIKEAYKTHLRQWAKEHEGW 313
           AAW + G   R R  G  N ++ LI      HL+   K+HE W
Sbjct: 168 AAWKMLGECHRQRGNGRVNIEKCLIAWMAAAHLK--PKDHELW 208


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
 Frame = +3

Query: 198 CK--DIQCVFEKSGFLTENKTLSRKHTKRISD 287
           CK  +I+CV+ +    ++NKTLSR++ + +S+
Sbjct: 58  CKTLNIECVYAQK---SQNKTLSREYLEELSE 86


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 42  FFTHHPSQHKYVF 4
           FF+HHPS  K VF
Sbjct: 148 FFSHHPSLSKQVF 160


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 261 RKHTKRISDNGRKSTRVGQWPWRRP 335
           R++  R ++NGR     G+  WRRP
Sbjct: 173 RRYVWRRNENGRFQCVCGRQNWRRP 197


>SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +1

Query: 130 VTFLSWGIQNLSQNVPTQSCLDLARTFNAFSKSRAF-*LKTRPYQGSI--QNASPTMGER 300
           + F SW I NLSQ +   S L +A     F + R+F  LK   +Q     Q +   +   
Sbjct: 27  IVFKSWHIGNLSQFL--LSLLAIAILGYLFERLRSFTSLKETEFQRGYAGQQSEGLLTHH 84

Query: 301 ARGLVSGR 324
           ++ L SGR
Sbjct: 85  SKSLKSGR 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,497,301
Number of Sequences: 5004
Number of extensions: 28967
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)