Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20881
(355 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0283 + 13726047-13726090,13726160-13726266,13726515-137266... 29 0.79
02_01_0258 - 1709672-1709752,1710277-1710460,1710627-1710841,171... 29 0.79
07_03_0207 - 15183894-15184685,15184993-15185078,15186042-151861... 28 2.4
07_03_0097 + 13372270-13372399,13372958-13373457 27 3.2
05_02_0114 + 6753868-6754126,6754225-6754592,6754704-6754992,675... 27 3.2
06_03_0854 + 25400855-25403741,25406174-25407708 27 4.2
02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875 27 5.6
11_06_0274 - 21811996-21812256 26 9.8
11_01_0192 - 1523572-1526097 26 9.8
09_03_0103 - 12383585-12384700 26 9.8
05_02_0031 - 5832475-5832696,5832789-5833064,5833303-5833380,583... 26 9.8
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917... 26 9.8
>06_02_0283 +
13726047-13726090,13726160-13726266,13726515-13726621,
13726735-13726812,13734948-13735071,13735585-13735658,
13735742-13735801,13737561-13737670,13737806-13737965,
13738218-13738360,13738461-13738605,13738727-13738819,
13740070-13740186
Length = 453
Score = 29.5 bits (63), Expect = 0.79
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 300 SFAHCRRCVLYA--SLIRSCFQLKSPTFRKRIECPCKVQAA 184
SF++C VLY L+ +L+SPT I CP AA
Sbjct: 4 SFSYCNLGVLYRFEGLVMGSSELRSPTLNLSIACPQLTPAA 44
>02_01_0258 -
1709672-1709752,1710277-1710460,1710627-1710841,
1711321-1711390,1711525-1711607,1711720-1711884,
1712068-1712172,1713021-1713140,1713620-1713718,
1713790-1713885,1714367-1714480,1715265-1715372,
1716200-1716264,1716430-1716609,1716747-1717397,
1717497-1717565,1717639-1717858
Length = 874
Score = 29.5 bits (63), Expect = 0.79
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +3
Query: 78 FTVAQAAKATLKPISACCNIPELGNPEPLAEC---SNPKLP 191
F VA + A+ K IS CC ++ +AEC SNP +P
Sbjct: 410 FEVAPSISASEKIISVCCKSSKISLALDVAECLCKSNPDMP 450
>07_03_0207 -
15183894-15184685,15184993-15185078,15186042-15186144,
15186890-15186971,15187112-15187203,15187295-15187383,
15187467-15187547,15188610-15188724,15188894-15188935
Length = 493
Score = 27.9 bits (59), Expect = 2.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 120 SACCNIPELGNPEPLAECSNPKLPGP 197
SACC IP++ + P A+ +N LP P
Sbjct: 223 SACCGIPQVASMVP-AQPANAPLPNP 247
>07_03_0097 + 13372270-13372399,13372958-13373457
Length = 209
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 294 AHCRRCVLYASLIRSCFQLKSPTFRKRIECPC 199
A CRRC+L + SC+ +P+ C C
Sbjct: 94 AECRRCILPPIVCSSCYAPPAPSSCSSHGCSC 125
>05_02_0114 +
6753868-6754126,6754225-6754592,6754704-6754992,
6755838-6755909,6757440-6757666
Length = 404
Score = 27.5 bits (58), Expect = 3.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 81 TVAQAAKATLKPISACCNIPELGNPEPLAECSNP 182
TVA + T +P+ ACC N P A C +P
Sbjct: 324 TVAMYTRFTQQPLKACCGGGGPYNYNPGAACGSP 357
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 27.1 bits (57), Expect = 4.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 253 PYQGSIQNASPTMGERARGLVSGRGEGHXRL 345
P +G + A T R RG+ +GRG G R+
Sbjct: 1333 PERGRGRVAEATFASRGRGVWNGRGRGRGRI 1363
>02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875
Length = 356
Score = 26.6 bits (56), Expect = 5.6
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -3
Query: 125 RRNWFQSCFRCLSYCKN 75
R NW+ SC C S+C++
Sbjct: 247 RGNWWTSCIFCKSFCRS 263
>11_06_0274 - 21811996-21812256
Length = 86
Score = 25.8 bits (54), Expect = 9.8
Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +3
Query: 291 GRKSTRVGQWPWR-RPSXTA 347
G++S+ V +WPWR RP+ A
Sbjct: 20 GQRSSGVRRWPWRTRPTAAA 39
>11_01_0192 - 1523572-1526097
Length = 841
Score = 25.8 bits (54), Expect = 9.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 278 HLRQWAKEHEGWSVAVEKAIXDC 346
H+ QW +G S+A+E+ I C
Sbjct: 437 HVHQWQTHGDGHSLAIEEDIAGC 459
>09_03_0103 - 12383585-12384700
Length = 371
Score = 25.8 bits (54), Expect = 9.8
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -3
Query: 131 TARRNWFQSC-FRCLSYCKNCK*DTNFHFY 45
TA + F SC + CL +C + K HFY
Sbjct: 139 TAGSSQFSSCNWHCLGFCPSTKEHKVVHFY 168
>05_02_0031 -
5832475-5832696,5832789-5833064,5833303-5833380,
5833464-5833550,5833639-5833699,5833792-5833880,
5834001-5834098,5834197-5834296,5834876-5834953
Length = 362
Score = 25.8 bits (54), Expect = 9.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 69 FAIFTVAQAAKATLKPISACCNIPELGNPEPL 164
+ ++ Q + P+S CC PEL +PE +
Sbjct: 316 YGLYRPYQMNSSPRSPLSPCCISPELLSPESM 347
>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
26892215-26892266,26893530-26893795,26894007-26894229,
26895154-26895327,26895408-26895485,26895566-26895817,
26896138-26898204,26899477-26901322,26901474-26901574,
26902179-26902535,26902681-26902799,26903558-26903559,
26903630-26903662,26903709-26903841,26904285-26904537,
26905688-26905912,26906401-26906466,26907373-26907471,
26908528-26908545,26908546-26908893,26909878-26910354
Length = 2522
Score = 25.8 bits (54), Expect = 9.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 237 LTENKTLSRKHTKRISDNGRKST 305
LT K L R+HT+++ G+K+T
Sbjct: 2465 LTITKKLLRRHTRKLRPRGQKNT 2487
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,822,215
Number of Sequences: 37544
Number of extensions: 193959
Number of successful extensions: 620
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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