Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20881
         (355 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34203| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_40348| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_41985| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.5  
SB_35075| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.5  
SB_23155| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.5  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_13947| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_8849| Best HMM Match : F-box (HMM E-Value=0.86)                     26   7.7  
SB_45735| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.7  
SB_39625| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.7  
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.7  

>SB_34203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 119 NWFQSCFRCLSYCKNCK*DTNF 54
           NW   CFRC   C +C  DT F
Sbjct: 32  NWHPDCFRC-EICNDCLADTGF 52


>SB_40348| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = +3

Query: 126 CCNIPELGNPEPLAECSNPKLPGP-----CKDIQCVFEKSGFLTENKTLSRKHTKRISDN 290
           CCN      P   + C   ++P P     C+ +Q V +K G LT    LSR+  ++   N
Sbjct: 81  CCNSTSKVIPAIRSRCLGVRIPAPSVEEICQILQFVCKKEG-LTIPSELSRRIAEKSGRN 139

Query: 291 GRKS 302
            RK+
Sbjct: 140 LRKA 143


>SB_41985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 472

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 309 PSCSFAHCRRCVLYASLIRSCFQLKSPTFRK 217
           P+CSFA C+ C L    +  C  +K+  FRK
Sbjct: 323 PACSFAFCKICRLGYHGVSPC-SIKNSEFRK 352


>SB_35075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1184

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +3

Query: 210  QCVFEKSGFLTENKTLSRKHTKRISDNGRKSTR 308
            Q VF  SG   EN T  RK     SDN  K T+
Sbjct: 1139 QRVFSSSGSYPENGTQGRKGGHTASDNHEKGTK 1171


>SB_23155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 22/73 (30%), Positives = 32/73 (43%)
 Frame = +3

Query: 90  QAAKATLKPISACCNIPELGNPEPLAECSNPKLPGPCKDIQCVFEKSGFLTENKTLSRKH 269
           +A +  ++P +A   IP L  P PL++   P LP P  D          + + K   R+ 
Sbjct: 70  RAPRTVVRPATA---IPPL--PSPLSQAEKPLLPSPPTDTPFSVPSRPDIRKGK--RRRR 122

Query: 270 TKRISDNGRKSTR 308
               SD   KSTR
Sbjct: 123 LPMTSDKTPKSTR 135


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 249  KTLSRKHTKRISDNGRKSTRVGQWPWRRP 335
            + +SR+HT  +S+ GR  T +    W++P
Sbjct: 1089 RRISREHTLVVSERGRDDTTLPTDLWKKP 1117


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 255  LSRKHTKRISDNGRKSTRVGQWPWRR 332
            LS  H ++  ++  +S+  G+WPW R
Sbjct: 2521 LSSTHERKTPESFSESSTNGEWPWGR 2546


>SB_13947| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 23/79 (29%), Positives = 35/79 (44%)
 Frame = +3

Query: 114 PISACCNIPELGNPEPLAECSNPKLPGPCKDIQCVFEKSGFLTENKTLSRKHTKRISDNG 293
           P S   N+  L   EPL E    KLP P + +   F+   FLT ++   +K  KR++   
Sbjct: 105 PPSEQANVINLTLLEPLEE---NKLPIPLERVSLEFDSPLFLTLSEQRVQKALKRLNPRK 161

Query: 294 RKSTRVGQWPWRRPSXTAL 350
               R+  + W+    T L
Sbjct: 162 ACEQRL-PFIWKMADVTPL 179


>SB_8849| Best HMM Match : F-box (HMM E-Value=0.86)
          Length = 1222

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 125 RRNWFQSCFRCLSYCKNCK*DTNFHF 48
           +RNW  S ++C+   +NC    + HF
Sbjct: 187 KRNWLYSNWKCVVCYRNCSQRVDSHF 212


>SB_45735| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 484

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -2

Query: 315 DQPSCSFAHCRRCVLYASLIRSCFQLKSPTFRKRIECPCKVQAAL 181
           + P   F  C+    YA   ++ FQ+++PTF  ++    K+QAA+
Sbjct: 37  NHPKSLFKACQ----YAEATKATFQIENPTFNSKV---LKLQAAI 74


>SB_39625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 902

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 164 ERFWIPQLRNVTARRNWFQSCFRC 93
           ER+WIP+LR +T R    +SC  C
Sbjct: 593 ERYWIPRLRYLTKR--LVKSCKGC 614


>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 136 FLSWGIQNLSQN--VPTQSCLDLARTFNAFSKSRAF*LKTRPYQGSIQNASPTM 291
           F+SW +++L Q+  V     +DL   F+  +K++AF    +  Q   +N S +M
Sbjct: 240 FISW-LKSLPQDSYVSDFEPMDLDVNFHHLTKAKAFRFSNKKLQSEAENLSKSM 292


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,420,151
Number of Sequences: 59808
Number of extensions: 227570
Number of successful extensions: 1186
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)