Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20881
(355 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81568-15|CAB04595.2| 610|Caenorhabditis elegans Hypothetical p... 27 3.8
Z81568-14|CAB04591.2| 608|Caenorhabditis elegans Hypothetical p... 27 3.8
AF043693-4|AAB97538.1| 971|Caenorhabditis elegans Hypothetical ... 27 5.0
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 26 6.6
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ... 26 6.6
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z72514-4|CAA96678.1| 204|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr... 26 8.7
AF000261-8|AAB52929.1| 376|Caenorhabditis elegans T box family ... 26 8.7
AC006661-2|AAK31542.1| 253|Caenorhabditis elegans Spliceosome-a... 26 8.7
>Z81568-15|CAB04595.2| 610|Caenorhabditis elegans Hypothetical
protein K08E3.3b protein.
Length = 610
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 218 FRKVGLFN*KQDLIKEAYKTHLRQWAKEH 304
F K+G F+ ++ I+E Y T LR AK++
Sbjct: 28 FEKLGQFSKEKAAIEEEYSTKLRSLAKKY 56
>Z81568-14|CAB04591.2| 608|Caenorhabditis elegans Hypothetical
protein K08E3.3a protein.
Length = 608
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 218 FRKVGLFN*KQDLIKEAYKTHLRQWAKEH 304
F K+G F+ ++ I+E Y T LR AK++
Sbjct: 28 FEKLGQFSKEKAAIEEEYSTKLRSLAKKY 56
>AF043693-4|AAB97538.1| 971|Caenorhabditis elegans Hypothetical
protein C34B2.6 protein.
Length = 971
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 183 KLPGPCKDIQCVFEKSGFLTENKT-LSRKH 269
K+PGP +D + + SG+L E K ++ +H
Sbjct: 634 KIPGPLRDRMEMIDVSGYLAEEKVEIAHQH 663
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Frame = +3
Query: 114 PISACCNIPELGNPEPLAECSNPKLP-GPCKDI 209
P + CC P P PL C +P PC I
Sbjct: 116 PAAPCCPPPPPPTPSPLVCCKQAPVPENPCCQI 148
>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
protein Y11D7A.14 protein.
Length = 1464
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 279 ISDNGRKSTRVGQWPWRR 332
I DN R+ + QWPW R
Sbjct: 795 IQDNVRQFAELSQWPWYR 812
>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = +3
Query: 132 NIPELGNPEP---LAECSNPKLPGPCKDIQCVFEKSGFLTENKTL 257
N G P+P L EC+ C+D+ C +LT KTL
Sbjct: 341 NCMNAGFPDPDGNLCECAAGYHGTNCQDVTCPLNWEQYLTNYKTL 385
>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = +3
Query: 132 NIPELGNPEP---LAECSNPKLPGPCKDIQCVFEKSGFLTENKTL 257
N G P+P L EC+ C+D+ C +LT KTL
Sbjct: 341 NCMNAGFPDPDGNLCECAAGYHGTNCQDVTCPLNWEQYLTNYKTL 385
>Z72514-4|CAA96678.1| 204|Caenorhabditis elegans Hypothetical
protein T10B10.6 protein.
Length = 204
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 57 VCVLFAIFTVAQAAKATLKPISAC 128
V +LF +FTV +AA+ + +S C
Sbjct: 7 VAILFLVFTVGEAAEDCVDLLSTC 30
>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = +3
Query: 132 NIPELGNPEP---LAECSNPKLPGPCKDIQCVFEKSGFLTENKTL 257
N G P+P L EC+ C+D+ C +LT KTL
Sbjct: 341 NCMNAGFPDPDGNLCECAAGYHGTNCQDVTCPLNWEQYLTNYKTL 385
>AF000261-8|AAB52929.1| 376|Caenorhabditis elegans T box family
protein 18 protein.
Length = 376
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 179 PKAAWTLQGHSMRFRKVGLFN*KQDLIKEAYKTHLRQWAKEHE 307
P+++ TL+ H + LFN K++ + + QWAK HE
Sbjct: 141 PESSSTLKDHKFSLNTM-LFNVKKNDAVKISLANQEQWAKFHE 182
>AC006661-2|AAK31542.1| 253|Caenorhabditis elegans
Spliceosome-associated proteinprotein 1 protein.
Length = 253
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3
Query: 132 NIPELGNPEPLAEC 173
NI ELG+ EPLAEC
Sbjct: 99 NICELGDIEPLAEC 112
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,381,514
Number of Sequences: 27780
Number of extensions: 173703
Number of successful extensions: 585
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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