Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20881
         (355 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   0.35 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   2.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   7.5  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              20   9.9  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 24.6 bits (51), Expect = 0.35
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -2

Query: 231 PTFRKRIECPCKVQAALGWNILREVLDSPTQEC 133
           PT R   +  C V+A   +N+L ++ ++ + +C
Sbjct: 100 PTARSLEKLLCNVEAEENYNLLEDIYETLSYDC 132


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 250  RPYQGSIQNASPTMGERARGLVSGRGE 330
            RP++GS   A   +G+  R    G+GE
Sbjct: 1325 RPWRGSATLACNAVGDPTREWYKGQGE 1351


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 250  RPYQGSIQNASPTMGERARGLVSGRGE 330
            RP++GS   A   +G+  R    G+GE
Sbjct: 1321 RPWRGSATLACNAVGDPTREWYKGQGE 1347


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 10/14 (71%), Positives = 11/14 (78%), Gaps = 1/14 (7%)
 Frame = -3

Query: 332 PSPRPLTNP-RALS 294
           PSPRPL  P +ALS
Sbjct: 884 PSPRPLVGPCKALS 897


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 111  KPISACCNIPELGNPEP 161
            + + +  NIP  G+PEP
Sbjct: 1843 RSVGSARNIPVSGSPEP 1859


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = -3

Query: 182 WVGTFCERFWIPQLRNVTARRNWFQSCFRCLSYCKN 75
           W+  F      P L+N  A   +  S F  L YC +
Sbjct: 385 WLPFFVLALVRPFLKNPDAIPAFLSSLFLWLGYCNS 420


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 173 TFCERFWIPQLRNVTA 126
           T   RFW+   RN+ A
Sbjct: 113 TVSARFWLMDCRNIGA 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,882
Number of Sequences: 438
Number of extensions: 1990
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)