Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20881
         (355 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ...    28   2.1  
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil...    28   2.1  
At1g54890.1 68414.m06267 late embryogenesis abundant protein-rel...    28   2.1  
At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat fam...    27   4.7  
At3g11402.1 68416.m01388 DC1 domain-containing protein contains ...    27   4.7  
At1g62870.1 68414.m07099 expressed protein                             27   4.7  
At3g42880.1 68416.m04495 leucine-rich repeat transmembrane prote...    26   6.3  
At3g14640.1 68416.m01853 cytochrome P450, putative similar to GB...    26   6.3  
At5g64860.1 68418.m08159 4-alpha-glucanotransferase, putative / ...    26   8.3  

>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
           WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
           contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
          Length = 711

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
 Frame = -3

Query: 161 RFWIPQLRNVTARRNWFQSCFRCLSYCK------NCK*DTNFHFYDFS 36
           ++W   + NV A +   +   R LS+CK      +C  DT    +DF+
Sbjct: 190 KYWQNNMNNVKANKTAHKESIRDLSFCKTDLKFCSCSDDTTVKVWDFT 237


>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
            protein / CHD family protein similar to SP|O14647
            Chromodomain-helicase-DNA-binding protein 2 (CHD-2) {Homo
            sapiens}; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain, PF00385: 'chromo' (CHRromatin
            Organization MOdifier)
          Length = 1722

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 238  KKPDFSKTH*MSLQGPGSFGLEHSARGSGFP 146
            ++P  + ++ + + GPG     H AR +GFP
Sbjct: 1690 ERPTITNSNSLGILGPGPLDRSHRARQTGFP 1720


>At1g54890.1 68414.m06267 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein (EMB7) GI:1350543 from
           [Picea glauca]
          Length = 347

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 255 RSCFQLKSPTFRKRIECP 202
           ++CFQ KSP F K+  CP
Sbjct: 33  KTCFQRKSPCFLKKQTCP 50


>At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat family
           protein contains G-protein beta WD-40 repeats
          Length = 539

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 194 TLQGHSMRFRKVGLFN*KQDLIKEAYKTHLRQWAKEHEGWSVAVEKAI 337
           TL GH+   R V L    + +    Y + +R W  E EG S+A  K +
Sbjct: 157 TLYGHTEAVRTVFLLASAKLVFTSGYDSIVRMWDME-EGLSIAASKPL 203


>At3g11402.1 68416.m01388 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 708

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 207 IQCVFEKSGFLTENKTLSRKHTKRISDNGRKSTR 308
           +QCVF  SG++    TL    TK    +  KSTR
Sbjct: 632 LQCVFGSSGYVKPGFTLYHYFTKMEVLSNSKSTR 665


>At1g62870.1 68414.m07099 expressed protein
          Length = 796

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 227 LFENALNVLARSRQLWVGTFCERFWIPQLRNVTARRNW 114
           L+E    +   S Q  VG   +RF    LRN+ ++  W
Sbjct: 340 LWETVRGICGNSPQRCVGIVSDRFMSKALRNLESQHQW 377


>At3g42880.1 68416.m04495 leucine-rich repeat transmembrane protein
           kinase, putative receptor-like protein kinase PRK1,
           Lycopersicon esculentum, PIR:T07865
          Length = 633

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 244 SVKKPDFSKTH*MSLQGPGSFGLEHSARGS-GFPNSGM 134
           S+KKP  S     + +G    G  H+ +G+ G P SGM
Sbjct: 301 SIKKPIDSSKKRSNAEGSSKKGSSHNGKGAGGGPGSGM 338


>At3g14640.1 68416.m01853 cytochrome P450, putative similar to
           GB:Q05047 from [Catharanthus roseus]
          Length = 514

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 270 TKRISDNGRKSTRVGQWPW 326
           +K +SD G  S  V  WPW
Sbjct: 183 SKLVSDKGSSSCEVDVWPW 201


>At5g64860.1 68418.m08159 4-alpha-glucanotransferase, putative /
           disproportionating enzyme, putative similar to
           4-alpha-glucanotransferase SP:Q06801 from [Solanum
           tuberosum]
          Length = 576

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 300 STRVGQWPWRRPSXTA 347
           +T VG W WR PS T+
Sbjct: 540 ATEVGNWGWRIPSSTS 555


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,920,195
Number of Sequences: 28952
Number of extensions: 158774
Number of successful extensions: 500
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 449370720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)