Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20880
         (579 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   4.3  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   4.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.3  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   4.3  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   4.3  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 90  CLRFLGNVMVP 58
           CL  +GNVMVP
Sbjct: 80  CLGVIGNVMVP 90


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 90  CLRFLGNVMVP 58
           CL  +GNVMVP
Sbjct: 80  CLGVIGNVMVP 90


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 207 HSSPAPHLKSIHAFAISCFKGPGLRSV*KNG 115
           H +P P +  + +   +    PGLR V  NG
Sbjct: 48  HGNPTPDIIWVRSDGTAVGDVPGLRQVLANG 78


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 418 SNHLVGLRPRGLFPSIFPDTNS 353
           +NH  G  P  + P +FP+TN+
Sbjct: 440 NNHYNG-DPNYISPEVFPNTNN 460


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 418 SNHLVGLRPRGLFPSIFPDTNS 353
           +NH  G  P  + P +FP+TN+
Sbjct: 388 NNHYNG-DPNYISPEVFPNTNN 408


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,335
Number of Sequences: 336
Number of extensions: 3368
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14412858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)