Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20880
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    28   1.1  
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    27   2.0  
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz...    27   2.6  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   3.5  
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac...    26   3.5  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   4.6  
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family...    26   4.6  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    26   4.6  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    25   8.0  

>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -2

Query: 197 QHHISKASTRLRSAALRVQVSAPYRKMEKTRVSTS 93
           ++ +S A  +L +  L V +S P   +EKTRVS++
Sbjct: 810 ENALSAAGKQLGNRVLNVVLSKPRESLEKTRVSSN 844


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 149 LKQLIANAWMLLRCGAGEECFG--YLGQRREATSLF*TTADQD*TVHTLPSPRTRVLR 316
           L Q+I     L++   G+  FG  YL QR+E   L+ T A +     + P P+  +L+
Sbjct: 12  LTQVIFEDRYLVKQKLGDGSFGTVYLAQRKEKNGLYETVAVKKLKNSSKPKPKHELLK 69


>SPBC18H10.15 |ppk23||serine/threonine protein kinase
           Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 398

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -1

Query: 513 MIYSL*CPASASDHWPHEGRRGMGSLVWCGFGRTTLSD--CARAVSFPRSSLTRIV 352
           M+  L   A    HW         +L+    G   L+D   AR VS P+SSLTR+V
Sbjct: 179 MLQLLAATAFMHHHWYLHRDLKPSNLLMNNTGEIKLADFGLARPVSEPKSSLTRLV 234


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 104 VSTSFVFVFWVMLWSLQILPSWVMAPFAI 18
           + TSFVF  W++L  L     W +A F I
Sbjct: 351 IFTSFVFWIWIVLPGLYYQNYWQVAHFPI 379


>SPAC11D3.03c |||meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 376 RERDRAGAVRQGGSTKSAPH*RSHSTTPFMRPMIGGAGGTSQ 501
           RER  A   RQ  S   + + R  ST P++RP++   G + Q
Sbjct: 97  RERFWAARTRQIHSAHVSTYDRLWSTLPYLRPLVTIIGDSLQ 138


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 226 AKRSNQSILDNCRSRLDCP 282
           AK   Q ++DNC+S +D P
Sbjct: 465 AKTLGQQLIDNCKSVIDAP 483


>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 344 LRKTIRVREDRGKETARAQSDKVVRPNPHHTRDPI 448
           LRK +       K TA A +D+  RP     RDPI
Sbjct: 173 LRKDVLDYIHANKATASAHADEQERPAKKRNRDPI 207


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -1

Query: 75  GNVMVPPDFTELGHGSLCH-SNTPS 4
           GNVM+PPD +  G GS     N PS
Sbjct: 553 GNVMMPPDASYTGTGSYVQPMNQPS 577


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +3

Query: 345 LERLFVSGKIE-GKRPRGRSPTRWFDQIRTTLEIPFHDALHAAND 476
           L +    G++E  KR   R PT   D I       FHDAL   +D
Sbjct: 91  LSKALGKGELETAKRLEARKPTYSLDHIIKERYPTFHDALKDIDD 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,742
Number of Sequences: 5004
Number of extensions: 55357
Number of successful extensions: 144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)