Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20880
(579 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0394 - 3105306-3106596,3107815-3107861 31 0.88
03_02_0359 - 7788382-7788522,7788931-7789837,7791227-7791337,779... 29 2.7
07_03_0300 - 16401011-16401435,16401692-16401743 28 4.7
06_03_0363 + 19904002-19905792 28 6.2
04_04_0832 - 28507448-28507516,28507902-28507980,28508527-28509614 28 6.2
01_06_1365 - 36690267-36692222 28 6.2
11_01_0624 - 5021105-5022061 27 8.2
10_08_0735 - 20200229-20200693,20200813-20201823,20202172-202022... 27 8.2
10_06_0172 + 11473892-11474896 27 8.2
08_01_0216 - 1717696-1718265,1718856-1720082,1720558-1720627,172... 27 8.2
05_03_0589 - 15872006-15872126,15872389-15872438,15872767-158728... 27 8.2
>12_01_0394 - 3105306-3106596,3107815-3107861
Length = 445
Score = 30.7 bits (66), Expect = 0.88
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +2
Query: 365 REDRGKETARAQSDKVVRPNPHH-TRDPIPRRPSCGQ*SEALAGHHKE*IMSNYNGH 532
REDRGKE R R N H +R+P RR G ++ + H+ + N N H
Sbjct: 181 REDRGKEKNRHDRHDHSRKNAHQISREPSTRREESG--NKKVTHDHQIHLGENENAH 235
>03_02_0359 - 7788382-7788522,7788931-7789837,7791227-7791337,
7791437-7791507,7791582-7791659,7792564-7792770,
7792867-7793046,7793249-7793471,7794133-7794453,
7794538-7795109
Length = 936
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +3
Query: 297 RALEYFGHIARKTPDSLERLFVSGKIEGKRPRGRSPTRWFD--QIRTTLEIPFHDALHAA 470
R+ + G ++ + + LER + +RP+ S TR+ D I L +PF D
Sbjct: 812 RSSYHSGDVSDGSVEELERSYNRSSSSWRRPQDLSTTRYMDDSDIEEGLNLPFADLPQKD 871
Query: 471 NDRR 482
D R
Sbjct: 872 EDAR 875
>07_03_0300 - 16401011-16401435,16401692-16401743
Length = 158
Score = 28.3 bits (60), Expect = 4.7
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 351 RLFVSGKIEGKRPRGRSPTRWFDQIR--TTLEIPFHD-ALHAANDRRRWRDITRSKSCRI 521
R V G +G PR + P + D + T++ P D ALH RRRWR +T S R+
Sbjct: 53 RRVVEGGSDGLLPRFQGPEQP-DPLAGDQTIDGPPTDLALHQEGRRRRWRRLTSLSSGRL 111
>06_03_0363 + 19904002-19905792
Length = 596
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = -2
Query: 275 SSLDL--QLSKIDWLLLFAVQGIRSILRQHHISKAST 171
SSLD+ +S I L +FA+ + ++R++H++ A+T
Sbjct: 418 SSLDVLASVSSISTLFIFALVAVALLVRRYHVAGATT 454
>04_04_0832 - 28507448-28507516,28507902-28507980,28508527-28509614
Length = 411
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +1
Query: 394 GAVRQGGSTKSAPH*RSHSTTPFMRPMIGGAGGTSQGV 507
G +Q G P H T F MIGG GTS G+
Sbjct: 330 GKEQQAGGGGGGPG--GHDTPGFWNGMIGGGSGTSWGI 365
>01_06_1365 - 36690267-36692222
Length = 651
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 382 RDRAGAVRQGGSTKSAPH*RSHST--TPFMRPMIGGAGGTS 498
R+R + + SAP +S S + F RP GGAGG+S
Sbjct: 38 RERLAGLEASAAAASAPGRKSTSAIRSLFARPFGGGAGGSS 78
>11_01_0624 - 5021105-5022061
Length = 318
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 417 DQIRTTLEI-PFHDALHAANDRRRWRDITRS 506
D + T L + P H+A+ RRWRD+ RS
Sbjct: 36 DILHTLLSLLPAHEAVRTCALGRRWRDVWRS 66
>10_08_0735 -
20200229-20200693,20200813-20201823,20202172-20202272,
20203424-20203562
Length = 571
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 371 DRGKETARAQSDKVVRPNPHHTRDPIPR 454
D G++ +R++S R PH T D +PR
Sbjct: 53 DMGRKDSRSRSGSAKRRGPHLTLDRLPR 80
>10_06_0172 + 11473892-11474896
Length = 334
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -2
Query: 557 VVSLTAEGRDHYNST*FTPCDVPPAPPIIGRMKGVVE 447
++SL+ GRDH T P P PP + R G VE
Sbjct: 73 LMSLSPRGRDHQPHTFGAPGPAP--PPTVARWWGTVE 107
>08_01_0216 -
1717696-1718265,1718856-1720082,1720558-1720627,
1721579-1721602,1722073-1722140
Length = 652
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 363 SGKIEGKRPRGRSPTRWFDQIRTTLEIPFHDALHAANDRR 482
+G G RPR SP W+D + + L +P + + +A + R
Sbjct: 211 NGISTGARPRHSSPDWWYDDV-SCLSLPLYKKVISAMEYR 249
>05_03_0589 -
15872006-15872126,15872389-15872438,15872767-15872835,
15873027-15873128,15873874-15873951,15874100-15874189,
15874730-15874822
Length = 200
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +2
Query: 311 LRSYCSENTG*LRKTIRVREDRGKETARAQSDK---VVRPNPHHT--RDPIPRRPSCGQ 472
LRSY S + +TI++ + KE ++ +SD V+ P+ T R I + P C Q
Sbjct: 45 LRSYTSVIHANVYQTIKILYEGAKELSQVESDSSKYVISPDNQETYLRGSILQLPDCAQ 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,127,986
Number of Sequences: 37544
Number of extensions: 468347
Number of successful extensions: 1367
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1367
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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