Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20880
         (579 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC110327-1|AAI10328.1|  455|Homo sapiens KCNK4 protein protein.        30   6.8  
AF247042-1|AAF64062.1|  419|Homo sapiens tandem pore domain pota...    30   6.8  

>BC110327-1|AAI10328.1|  455|Homo sapiens KCNK4 protein protein.
          Length = 455

 Score = 29.9 bits (64), Expect = 6.8
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 287 LPSPRTRVLRSYCSENTG*LRKTIRVREDRGKETARAQSDKVVRPNPHHTRDPI-PRRP 460
           LPSP T     Y SEN   + ++   + +RG    RA   +  RPNP   R P+ PR P
Sbjct: 390 LPSPPTASALDYPSENLAFIDESSDTQSERGCPLPRAPRGR-RRPNP--PRKPVRPRGP 445


>AF247042-1|AAF64062.1|  419|Homo sapiens tandem pore domain
           potassium channel TRAAK protein.
          Length = 419

 Score = 29.9 bits (64), Expect = 6.8
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 287 LPSPRTRVLRSYCSENTG*LRKTIRVREDRGKETARAQSDKVVRPNPHHTRDPI-PRRP 460
           LPSP T     Y SEN   + ++   + +RG    RA   +  RPNP   R P+ PR P
Sbjct: 354 LPSPPTASALDYPSENLAFIDESSDTQSERGCPLPRAPRGR-RRPNP--PRKPVRPRGP 409


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,478,613
Number of Sequences: 237096
Number of extensions: 2279229
Number of successful extensions: 5090
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5090
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5985693436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)