Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20880
(579 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical ... 40 0.002
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 38 0.007
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 38 0.007
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 37 0.009
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 37 0.009
Z29094-8|CAA82337.1| 254|Caenorhabditis elegans Hypothetical pr... 29 3.2
U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical pr... 28 4.2
U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical pr... 28 5.5
AF024501-1|AAZ91348.1| 590|Caenorhabditis elegans Hypothetical ... 28 5.5
U39744-1|AAK18882.1| 471|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z46828-1|CAA86856.1| 542|Caenorhabditis elegans Hypothetical pr... 27 9.6
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 27 9.6
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 27 9.6
AF185706-1|AAD56241.1| 925|Caenorhabditis elegans yolk receptor... 27 9.6
>AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical
protein Y51F10.8 protein.
Length = 204
Score = 39.5 bits (88), Expect = 0.002
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Frame = +3
Query: 216 TLDSEEKQPVYFRQLQIKTRLSTLCL---RRALEYFGHIARKTPDSLERLFVSG-KIEGK 383
TL + ++ ++ +++ K++L + +R L + GH+AR+T L + K
Sbjct: 91 TLTEQRERNIHREEVREKSKLRDPLIHIKKRKLGWAGHVARRTDGRWTTLMNDWCPRDEK 150
Query: 384 RPRGRSPTRWFDQIRTTLEIPFHDAL--------HAANDRRRWRDITRS 506
RP GR P RW D +R E+ DA A DR+ W+ + R+
Sbjct: 151 RPVGRPPMRWNDSLRK--EVTTRDAFGQVKQLWSTQAKDRKAWKAVIRA 197
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 37.5 bits (83), Expect = 0.007
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Frame = +3
Query: 294 RRALEYFGHIARKTPDSLERLFVSGKIEG-KRPRGRSPTRWFDQIRTTLEIPFHDA---- 458
+R L + GH+AR+ L + G KRP GR P RW D +R EI DA
Sbjct: 984 KRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRK--EITTRDADGEV 1041
Query: 459 ----LHAANDRRRWRDITR 503
A DR++W + R
Sbjct: 1042 ITPWSTIAKDRKQWLAVIR 1060
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 37.5 bits (83), Expect = 0.007
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Frame = +3
Query: 294 RRALEYFGHIARKTPDSLERLFVSGKIEG-KRPRGRSPTRWFDQIRTTLEIPFHDA---- 458
+R L + GH+AR+ L + G KRP GR P RW D +R EI DA
Sbjct: 723 KRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRK--EITTRDADGEV 780
Query: 459 ----LHAANDRRRWRDITR 503
A DR++W + R
Sbjct: 781 ITPWSTIAKDRKQWLAVIR 799
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical protein
F20B4.7 protein.
Length = 891
Score = 37.1 bits (82), Expect = 0.009
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Frame = +3
Query: 294 RRALEYFGHIARKTPDSLERLFVSGKIEG-KRPRGRSPTRWFDQIRTTLEIPFHDA---- 458
+R L + GH+AR+ L + G KRP GR P RW D +R EI DA
Sbjct: 809 KRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRK--EITTRDADGEV 866
Query: 459 ----LHAANDRRRWRDITR 503
A DR+ W + R
Sbjct: 867 ITPWSTIAKDRKEWLAVIR 885
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 37.1 bits (82), Expect = 0.009
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Frame = +3
Query: 294 RRALEYFGHIARKTPDSLERLFVSGKIEG-KRPRGRSPTRWFDQIRTTLEIPFHDA---- 458
+R L + GH+AR+ L + G KRP GR P RW D +R EI DA
Sbjct: 335 KRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRK--EITTRDADGEV 392
Query: 459 ----LHAANDRRRWRDITR 503
A DR+ W + R
Sbjct: 393 ITPWSTIAKDRKEWLAVIR 411
>Z29094-8|CAA82337.1| 254|Caenorhabditis elegans Hypothetical
protein C07A9.10 protein.
Length = 254
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Frame = +3
Query: 381 KRPRGRSPTRWFDQIR---TTLEIPFHDAL---HAANDRRRWRDITRSKSCR 518
KRP G+ P RW D +R TT ++ + A DR+ W+ + R+ R
Sbjct: 14 KRPVGKPPMRWTDSLRKEITTRDMGNNIITPWSTQAKDRKAWKAVIRTTETR 65
>U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical
protein C52E12.4 protein.
Length = 1487
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 2 YDGVLE-WQREP*PSSVKSGGTITLPRKRR 88
++G++E QR P SGGT TLPR RR
Sbjct: 150 HNGIIEKQQRIHHPPGTVSGGTHTLPRNRR 179
>U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical
protein F09F7.3 protein.
Length = 1154
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -2
Query: 293 KAECGQSSLDLQLSKIDWLLLFAVQGIRSILRQHHIS 183
K+ECG+ + L WLL+ A +R +++QH +S
Sbjct: 13 KSECGKDQKCMPLED-KWLLVPAFLKVRGLVKQHLVS 48
>AF024501-1|AAZ91348.1| 590|Caenorhabditis elegans Hypothetical
protein F39E9.4 protein.
Length = 590
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -1
Query: 396 ARAVSFPRSSLTRIV--FLSYPVFSEQYDRSTRVRGEGRV 283
A A FP +L ++ FL P+F +Y R + G GRV
Sbjct: 386 ANAFYFPTKNLLNVLVPFLDKPLFDFKYPRYVAMAGVGRV 425
>U39744-1|AAK18882.1| 471|Caenorhabditis elegans Hypothetical
protein C03F11.1 protein.
Length = 471
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Frame = -2
Query: 206 ILRQHHISKASTRLRSAALRVQVSAPY---RKMEKTRVS--TSFVFVFWVML 66
+L ASTR +A R+QV+ + +++ V T+F F+FW+++
Sbjct: 227 VLHSKQFQDASTRTLAALNRIQVNFSFVIKTSLDQQPVLFLTTFTFIFWIIM 278
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 27.1 bits (57), Expect = 9.6
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -1
Query: 258 VV*NRLVASLRCPRYPKHSSPAP-HLKSIHAFAISCFKGPGLRSV*KNGKDQSEHQFCLR 82
VV NRL ++R P + + SP P + S F +S KG G G+D HQ L
Sbjct: 29 VVDNRLTENMRVPSFERLPSPTPRYFGSCKWFNVS--KGYGFVIDDITGEDLFVHQSNLN 86
Query: 81 FLG 73
G
Sbjct: 87 MQG 89
>Z46828-1|CAA86856.1| 542|Caenorhabditis elegans Hypothetical
protein R03D7.2 protein.
Length = 542
Score = 27.1 bits (57), Expect = 9.6
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = +3
Query: 363 SGKIEGKRPRGRSPTRWFDQIRTTLEIPFHDALHA-ANDRRRWRDITRSKSCRIIMVTTL 539
S KI+G PR RSP R + +LH+ RRR R + + +
Sbjct: 9 SSKIDGAAPRSRSPHRRQPHHSRSSSNNISSSLHSRLRRRRRSRSQRKQLQWQQQQLRLR 68
Query: 540 SSEGNDARRRNN 575
+ N +RRR +
Sbjct: 69 KEQQNQSRRRTS 80
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 27.1 bits (57), Expect = 9.6
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -1
Query: 258 VV*NRLVASLRCPRYPKHSSPAP-HLKSIHAFAISCFKGPGLRSV*KNGKDQSEHQFCLR 82
VV NRL ++R P + + SP P + S F +S KG G G+D HQ L
Sbjct: 29 VVDNRLTENMRVPSFERLPSPTPRYFGSCKWFNVS--KGYGFVIDDITGEDLFVHQSNLN 86
Query: 81 FLG 73
G
Sbjct: 87 MQG 89
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 27.1 bits (57), Expect = 9.6
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -1
Query: 258 VV*NRLVASLRCPRYPKHSSPAP-HLKSIHAFAISCFKGPGLRSV*KNGKDQSEHQFCLR 82
VV NRL ++R P + + SP P + S F +S KG G G+D HQ L
Sbjct: 29 VVDNRLTENMRVPSFERLPSPTPRYFGSCKWFNVS--KGYGFVIDDITGEDLFVHQSNLN 86
Query: 81 FLG 73
G
Sbjct: 87 MQG 89
>AF185706-1|AAD56241.1| 925|Caenorhabditis elegans yolk receptor
RME-2 protein.
Length = 925
Score = 27.1 bits (57), Expect = 9.6
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = +1
Query: 178 AFEMWCWRRMLR-IPWTAKRSNQSILDNCRSRLDCPHSAFAAHSSTSVILLGKHRIA*KD 354
A E C LR IP + N + DN R C ++A H STS +L +
Sbjct: 35 AKEFDCGNGRLRCIPAEWQCDNVADCDNGRDESGC---SYAHHCSTSFMLCKNGLCVANE 91
Query: 355 YSCQGRSRERD 387
+ C G RD
Sbjct: 92 FKCDGEEHCRD 102
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,842,924
Number of Sequences: 27780
Number of extensions: 330237
Number of successful extensions: 1005
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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