Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20880
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.71 
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   5.0  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   5.0  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   5.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   5.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   5.0  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   8.8  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 393 GRSPTRWFDQIRTTLEIPFHDALHAAND 476
           G+  T +FD +R  +   FH  L+  N+
Sbjct: 240 GKKITHFFDLVRPLIAFKFHSILNRTNN 267


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
 Frame = +1

Query: 439 RSHSTTPFM-RPMIGGAGGTSQGVNHVEL*WSRPSAVRETTRGGGI 573
           + +   PF+ RP+ G        +      WSRP    +TT   GI
Sbjct: 17  KRNENDPFLKRPITGDEKWVVNNIKRKRW-WSRPREPAQTTSKAGI 61


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 494 VPPAPPIIGRMKGVVEWD 441
           +P APPI   ++  +EW+
Sbjct: 103 IPTAPPIPPEIQRALEWN 120


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 347 RKTIRVREDRGKETARAQSDKVVRP 421
           +KT   RED  +E A+   ++ + P
Sbjct: 132 KKTFAAREDNDEEEAQKPKEQYIPP 156


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -1

Query: 495 CPASASDHWPHEGRRG 448
           C       WPHE +RG
Sbjct: 485 CMDCGPGKWPHEDKRG 500


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -1

Query: 495 CPASASDHWPHEGRRG 448
           C       WPHE +RG
Sbjct: 575 CMDCGPGKWPHEDKRG 590


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -3

Query: 280 DSLVLICSCLK*TGCFSSLSKVSEAFFASTT 188
           D L+  CS +        +SK+ E FF   T
Sbjct: 98  DQLLAECSPISDPNALIKISKILECFFKYKT 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,929
Number of Sequences: 438
Number of extensions: 4470
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)