Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20880
(579 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g11250.1 68414.m01288 syntaxin, putative (SYP125) similar to ... 32 0.32
At5g28810.1 68418.m03542 hypothetical protein 31 0.42
At1g61290.1 68414.m06908 syntaxin, putative (SYP124) similar to ... 31 0.42
At1g18520.1 68414.m02311 senescence-associated family protein si... 30 1.3
At4g16845.2 68417.m02544 vernalization 2 protein (VRN2) identica... 29 2.2
At4g16845.1 68417.m02543 vernalization 2 protein (VRN2) identica... 29 2.2
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family... 29 2.2
At3g10100.1 68416.m01210 filament protein-related similar to YEA... 29 2.2
At1g01960.1 68414.m00114 guanine nucleotide exchange family prot... 29 3.0
At4g20730.1 68417.m03013 filament protein-related similar to Cyt... 28 3.9
At3g15460.1 68416.m01961 brix domain-containing protein contains... 28 5.2
At1g63110.3 68414.m07131 cell division cycle protein-related con... 28 5.2
At1g63110.2 68414.m07132 cell division cycle protein-related con... 28 5.2
At1g63110.1 68414.m07130 cell division cycle protein-related con... 28 5.2
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 27 6.8
At3g27960.1 68416.m03489 kinesin light chain-related low similar... 27 6.8
At1g21980.1 68414.m02750 1-phosphatidylinositol-4-phosphate 5-ki... 27 9.0
>At1g11250.1 68414.m01288 syntaxin, putative (SYP125) similar to
syntaxin-related protein At-SYR1 GB:AAD11809 GI:4206789
from [Arabidopsis thaliana]
Length = 298
Score = 31.9 bits (69), Expect = 0.32
Identities = 20/84 (23%), Positives = 44/84 (52%)
Frame = -2
Query: 296 AKAECGQSSLDLQLSKIDWLLLFAVQGIRSILRQHHISKASTRLRSAALRVQVSAPYRKM 117
A E ++ L+L +D L QG + + H++KAS+ +R ++Q + Y+K
Sbjct: 207 AVKEIEKNLLELHQVFLDMAALVEAQGQQLNNIESHVAKASSFVRRGTDQLQDAREYQK- 265
Query: 116 EKTRVSTSFVFVFWVMLWSLQILP 45
+R T + + +++++ L ++P
Sbjct: 266 -SSRKWTCYAIILFIVIFILLLIP 288
>At5g28810.1 68418.m03542 hypothetical protein
Length = 560
Score = 31.5 bits (68), Expect = 0.42
Identities = 21/58 (36%), Positives = 30/58 (51%)
Frame = -1
Query: 471 WPHEGRRGMGSLVWCGFGRTTLSDCARAVSFPRSSLTRIVFLSYPVFSEQYDRSTRVR 298
W +E G+G CGFG+TTL+ C + + RSS R F ++ + R RVR
Sbjct: 178 WIYESVPGIGEA--CGFGKTTLT-CVPLLDW-RSSRKRFNFTAFIEKEKAAHRQVRVR 231
>At1g61290.1 68414.m06908 syntaxin, putative (SYP124) similar to
syntaxin-related protein Nt-syr1 GI:4206787 from
[Nicotiana tabacum]
Length = 303
Score = 31.5 bits (68), Expect = 0.42
Identities = 20/85 (23%), Positives = 46/85 (54%)
Frame = -2
Query: 296 AKAECGQSSLDLQLSKIDWLLLFAVQGIRSILRQHHISKASTRLRSAALRVQVSAPYRKM 117
A E ++ ++L +D L QG + + H+SKAS+ +R ++Q + Y+K
Sbjct: 212 AVKEIEKNLIELHQVFLDMAALVESQGQQLNDIESHVSKASSFVRRGTDQLQDAREYQK- 270
Query: 116 EKTRVSTSFVFVFWVMLWSLQILPS 42
+R T + + ++++++L ++P+
Sbjct: 271 -SSRKWTCYAILLFIVVFALLLIPA 294
>At1g18520.1 68414.m02311 senescence-associated family protein
similar to senescence-associated protein 5 [Hemerocallis
hybrid cultivar] gi|3551954|gb|AAC34855
Length = 271
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 468 ANDRRRWRDITRSKSCRIIMVTTLSSEGNDARRRN 572
AN R +WR++ C +I++ T+ S G ARR N
Sbjct: 228 ANIREKWRNLLVFNICLLILLITVYSCGCCARRNN 262
>At4g16845.2 68417.m02544 vernalization 2 protein (VRN2) identical
to vernalization 2 protein [Arabidopsis thaliana]
gi|16945788|gb|AAL32135
Length = 380
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 190 WCWRRMLRIPWTAKRSNQSILDNCRSRLD-CPHSAFAAHSSTSV 318
WCWR L W + + ++NC + L+ C +++ +++ SV
Sbjct: 301 WCWRLFLIKLWNHGLVDSATINNCNTILENCRNTSVTNNNNNSV 344
>At4g16845.1 68417.m02543 vernalization 2 protein (VRN2) identical
to vernalization 2 protein [Arabidopsis thaliana]
gi|16945788|gb|AAL32135
Length = 440
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 190 WCWRRMLRIPWTAKRSNQSILDNCRSRLD-CPHSAFAAHSSTSV 318
WCWR L W + + ++NC + L+ C +++ +++ SV
Sbjct: 361 WCWRLFLIKLWNHGLVDSATINNCNTILENCRNTSVTNNNNNSV 404
>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to hydroxyproline-rich
glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
Length = 219
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 569 PPPRVVSLTAEGRDHYNST*FTPCDVPPAPPII 471
PPP + ++T G H+ + P PP PP I
Sbjct: 101 PPPPLSAITTTGHHHHRRSPPPPPPPPPPPPTI 133
>At3g10100.1 68416.m01210 filament protein-related similar to YEAST
NUF1 protein (Spindle poly body spacer protein SPC110)
(SP:P32380) {Saccharomyces cerevisiae}; similar to
Myosin heavy chain, smooth muscle isoform (SMMHC)
(SP:P35749) {Homo sapiens}
Length = 1004
Score = 29.1 bits (62), Expect = 2.2
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +3
Query: 390 RGRSPTRWFDQIRTTLEIP--FHDALHAA--NDRRRWRDITRSKSCRII 524
R R+ T + D+ R + E P F L A RR W+DITRS+ RI+
Sbjct: 282 RKRTWTEFPDRYRPSPEFPVEFEGVLEAIFRARRRAWKDITRSRVNRIM 330
>At1g01960.1 68414.m00114 guanine nucleotide exchange family protein
similar to guanine nucleotide exchange factor [Homo
sapiens] GI:5456754; contains Pfam profile PF01369: Sec7
domain
Length = 1750
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +3
Query: 237 QPVYFRQLQIKTRLSTLCLRRALEYFGHIARKTPDSLERLFVSGKIEGKRPRGRSP 404
QPV + + +I++ L +LC R LE++ +I+ S SG + K R+P
Sbjct: 1634 QPVGYNEAEIESHLISLC-REVLEFYINISCSKEQSSRWAVPSGSGKKKELTARAP 1688
>At4g20730.1 68417.m03013 filament protein-related similar to
Cytadherence high molecular weight protein 2 (SP:P47460)
[Mycoplasma genitalium]; similar to YEAST NUF1
protein (Spindle poly body spacer protein SPC110)
(SP:P32380) {Saccharomyces cerevisiae}; also
SP|Q9UKX2|MYH2_HUMAN Myosin heavy chain, skeletal
muscle, SP|P31732|OV71_ONCVO Muscle cell intermediate
filament protein SP|P12882|MYH1_HUMAN Myosin heavy
chain, skeletal muscle,. SP|Q17107|AV71_ACAVI Muscle
cell intermediate filament protein
Length = 800
Score = 28.3 bits (60), Expect = 3.9
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +3
Query: 390 RGRSPTRWFDQIRTTLEIP--FHDALHAA--NDRRRWRDITRSKSCRII 524
R R T + D+ R + E P F L A RR W+DITRS+ RI+
Sbjct: 283 RKRMWTEFPDRYRPSPEFPVEFEGVLEAIFRARRRAWKDITRSRVNRIM 331
>At3g15460.1 68416.m01961 brix domain-containing protein contains
Pfam domain, PF04427: Brix domain
Length = 315
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/58 (25%), Positives = 23/58 (39%)
Frame = +3
Query: 222 DSEEKQPVYFRQLQIKTRLSTLCLRRALEYFGHIARKTPDSLERLFVSGKIEGKRPRG 395
D+E +P Y + K ++ C RR + H+ L K+E K RG
Sbjct: 37 DAENSKPAYASVFRNKEKVLVTCSRRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSRG 94
>At1g63110.3 68414.m07131 cell division cycle protein-related
contains 9 transmembrane domains; similar to PIG-U
(GI:27372215) [Rattus norvegicus]; similar to Cell
division cycle protein 91-like 1 (CDC91-like 1 protein)
(PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens]
Length = 407
Score = 27.9 bits (59), Expect = 5.2
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -2
Query: 86 FVFWVMLWSLQIL 48
F+FWV+LWSL +L
Sbjct: 204 FLFWVLLWSLYVL 216
>At1g63110.2 68414.m07132 cell division cycle protein-related
contains 9 transmembrane domains; similar to PIG-U
(GI:27372215) [Rattus norvegicus]; similar to Cell
division cycle protein 91-like 1 (CDC91-like 1 protein)
(PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens]
Length = 397
Score = 27.9 bits (59), Expect = 5.2
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -2
Query: 86 FVFWVMLWSLQIL 48
F+FWV+LWSL +L
Sbjct: 194 FLFWVLLWSLYVL 206
>At1g63110.1 68414.m07130 cell division cycle protein-related
contains 9 transmembrane domains; similar to PIG-U
(GI:27372215) [Rattus norvegicus]; similar to Cell
division cycle protein 91-like 1 (CDC91-like 1 protein)
(PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens]
Length = 469
Score = 27.9 bits (59), Expect = 5.2
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -2
Query: 86 FVFWVMLWSLQIL 48
F+FWV+LWSL +L
Sbjct: 266 FLFWVLLWSLYVL 278
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 27.5 bits (58), Expect = 6.8
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = +3
Query: 195 LAKNASDTLDSEEKQPVYFRQLQIKTRLSTLCLRRALEYFGHIARKTPDSLERLFVSGKI 374
L K D D+ EK FR +K ++TLC + + H A D++ RL S +
Sbjct: 136 LLKRVIDNKDNAEK----FRSDLLKIAMTTLCSKILSQDKEHFAEMAVDAVFRLKGSTNL 191
Query: 375 EG----KRPRGRSPTRWFDQ 422
E K+P G + D+
Sbjct: 192 EAIQIIKKPGGSLKDSFLDE 211
>At3g27960.1 68416.m03489 kinesin light chain-related low similarity
to kinesin light chain [Plectonema boryanum] GI:2645229;
contains Pfam profile PF00515: TPR Domain
Length = 663
Score = 27.5 bits (58), Expect = 6.8
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = -2
Query: 305 ECAAKAECGQSSLDLQLSKIDWLLLFAVQGIRSILRQHHISKASTRLRSAALRVQVSAPY 126
E A +C + L++ D + FA Q ++ +Q K T A + V+++ Y
Sbjct: 366 EDVAAVDCSIGDAYMSLARFDEAI-FAYQKALAVFKQ---GKGETHSSVALVYVRLADLY 421
Query: 125 RKMEKTRVSTSF 90
K+ KTR S S+
Sbjct: 422 NKIGKTRDSKSY 433
>At1g21980.1 68414.m02750 1-phosphatidylinositol-4-phosphate
5-kinase, putative / PIP kinase, putative /
PtdIns(4)P-5-kinase, putative / diphosphoinositide
kinase, putative strong similarity to
phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
[Arabidopsis thaliana] GI:3702691; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF02493: MORN repeat
Length = 752
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 84 EDKTGAHSGLFHFSIRSGDLDP*SS*SQTRGC 179
+D TG GL F +RSG +D + RGC
Sbjct: 605 DDNTGEKMGLSPFVLRSGRIDSYQNEKFMRGC 636
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,454,251
Number of Sequences: 28952
Number of extensions: 330096
Number of successful extensions: 850
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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