Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20879
         (568 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    35   1.2  
UniRef50_Q8I5I2 Cluster: Putative uncharacterized protein; n=3; ...    33   6.2  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 35.1 bits (77), Expect = 1.2
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +1

Query: 139 WYLPVRTHKRSYHQ 180
           WYLP RTHKRSYH+
Sbjct: 572 WYLPARTHKRSYHR 585


>UniRef50_Q8I5I2 Cluster: Putative uncharacterized protein; n=3;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 4494

 Score = 32.7 bits (71), Expect = 6.2
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
 Frame = +1

Query: 295  PVNFVLKVIHTFFL*F**RLYFKVLSLIKFVRL---LVSLYYKDYFLIL*T*FHLYFILD 465
            PV  +++VI+ F L +   L+ K ++ + ++++   LV   Y D F +L + FH Y +  
Sbjct: 3370 PVIQIIRVIYLFSLKYFPTLFLKTINYLNYIKVDENLVQFLYADDFEVLDSLFHKYSLSK 3429

Query: 466  Y 468
            Y
Sbjct: 3430 Y 3430


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 478,651,437
Number of Sequences: 1657284
Number of extensions: 8807661
Number of successful extensions: 18380
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18378
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38321472724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)