Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20879
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0629 - 4582045-4582140,4582218-4582480,4582584-4582704,458...    28   6.0  
09_02_0257 + 6355876-6356444,6356690-6357136,6357231-6359166           27   7.9  

>06_01_0629 -
           4582045-4582140,4582218-4582480,4582584-4582704,
           4582833-4583171,4583208-4583245,4583355-4583670,
           4583753-4584006,4586417-4586546
          Length = 518

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 231 LCIVSSCHCEEKIEDIFLKLSTRKFCFESNTYFFFMILV 347
           + +++    E KIE +FLK  T++  F +  +F F  LV
Sbjct: 160 MLVLAKNESESKIEWVFLKPLTKELWFATVIFFLFTALV 198


>09_02_0257 + 6355876-6356444,6356690-6357136,6357231-6359166
          Length = 983

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -1

Query: 286 LRKMSSIFSSQWQDETMQSNKTSDFFIELIFRDRFTGGRTSCESARVGTTALPI 125
           LRK    + S W      + + SDF   L  R   TGGR S E++ +    LP+
Sbjct: 152 LRKKWDDWKSDWFYTPSPTKRASDFRASLQRRPP-TGGRRSAEASLIPQGVLPL 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,532,342
Number of Sequences: 37544
Number of extensions: 233495
Number of successful extensions: 450
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)