Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20879
         (568 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28221| Best HMM Match : eRF1_3 (HMM E-Value=8.7)                    31   0.50 
SB_41718| Best HMM Match : RVT_1 (HMM E-Value=1.4e-34)                 29   3.5  
SB_37650| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_54746| Best HMM Match : RVT_1 (HMM E-Value=8.4e-11)                 29   3.5  
SB_32334| Best HMM Match : UPF0058 (HMM E-Value=4.6)                   29   3.5  
SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)                       28   4.6  

>SB_28221| Best HMM Match : eRF1_3 (HMM E-Value=8.7)
          Length = 348

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 22/79 (27%), Positives = 39/79 (49%)
 Frame = +3

Query: 57  RSQYSYNGYPTLQTETHYCFTAEIGRAVVPTRADSQEVLPPVNXXXXXXXXXXXDVLLLC 236
           RS Y ++ Y TL T++      ++G++ +P    + +++P +N           D+ LL 
Sbjct: 7   RSVYRHSSYRTLPTKSK-SLRMKVGKSNIPRLVPNNKLMPFINSI---------DIRLLR 56

Query: 237 IVSSCHCEEKIEDIFLKLS 293
            V    C +  EDI LKL+
Sbjct: 57  SVRDDFCADLPEDILLKLA 75


>SB_41718| Best HMM Match : RVT_1 (HMM E-Value=1.4e-34)
          Length = 470

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/56 (32%), Positives = 32/56 (57%)
 Frame = -1

Query: 286 LRKMSSIFSSQWQDETMQSNKTSDFFIELIFRDRFTGGRTSCESARVGTTALPISA 119
           L K++ +F S W+ ET+  +   D  I  I++ +  G + SC++ R G + L I+A
Sbjct: 47  LHKLTVLFQSLWESETLPQD-FKDATIVHIYKRK--GNKRSCDNHR-GISLLSIAA 98


>SB_37650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/56 (32%), Positives = 32/56 (57%)
 Frame = -1

Query: 286 LRKMSSIFSSQWQDETMQSNKTSDFFIELIFRDRFTGGRTSCESARVGTTALPISA 119
           L K++ +F S W+ ET+  +   D  I  I++ +  G + SC++ R G + L I+A
Sbjct: 33  LHKLTVLFQSLWESETLPQD-FKDATIVHIYKRK--GNKRSCDNHR-GISLLSIAA 84


>SB_54746| Best HMM Match : RVT_1 (HMM E-Value=8.4e-11)
          Length = 959

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/56 (32%), Positives = 32/56 (57%)
 Frame = -1

Query: 286 LRKMSSIFSSQWQDETMQSNKTSDFFIELIFRDRFTGGRTSCESARVGTTALPISA 119
           L K++ +F S W+ ET+  +   D  I  I++ +  G + SC++ R G + L I+A
Sbjct: 539 LHKLTVLFQSLWESETLPQD-FKDATIVHIYKRK--GNKRSCDNHR-GISLLSIAA 590


>SB_32334| Best HMM Match : UPF0058 (HMM E-Value=4.6)
          Length = 311

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/56 (32%), Positives = 32/56 (57%)
 Frame = -1

Query: 286 LRKMSSIFSSQWQDETMQSNKTSDFFIELIFRDRFTGGRTSCESARVGTTALPISA 119
           L K++ +F S W+ ET+  +   D  I  I++ +  G + SC++ R G + L I+A
Sbjct: 193 LHKLTVLFQSLWESETLPQD-FKDATIVHIYKRK--GNKRSCDNHR-GISLLSIAA 244


>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 613

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 145 LPVRTHKRSYHQ*TDPEKLAR*KNRMFCC 231
           +P+  H+  Y   TDP+ +AR ++R F C
Sbjct: 58  VPLEKHENCYAVFTDPQDVARVESRTFIC 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,760,544
Number of Sequences: 59808
Number of extensions: 273258
Number of successful extensions: 507
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)