Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20879
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   0.93 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   0.93 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 316  LSKQNLRVLSLRKMS-SIFSSQWQDETMQSNKTSDFFI 206
            LS+    + SL+K+   + SS W   + Q+N +SD+ I
Sbjct: 1884 LSEAECDIDSLKKLKLGLRSSLWSRPSTQNNPSSDYSI 1921



 Score = 23.0 bits (47), Expect = 2.1
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 74  QRLPHPSNRNALL-LHGRNRQGGGTYPCGLTR 166
           ++LP    ++ LL L+G NR+  G Y C + R
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRR 403


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 316  LSKQNLRVLSLRKMS-SIFSSQWQDETMQSNKTSDFFI 206
            LS+    + SL+K+   + SS W   + Q+N +SD+ I
Sbjct: 1880 LSEAECDIDSLKKLKLGLRSSLWSRPSTQNNPSSDYSI 1917



 Score = 23.0 bits (47), Expect = 2.1
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 74  QRLPHPSNRNALL-LHGRNRQGGGTYPCGLTR 166
           ++LP    ++ LL L+G NR+  G Y C + R
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRR 403


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -1

Query: 523 QLLNLHSILFIFYFTLILYNPK*NINEIRSK 431
           QL  +  +L I    L+ Y P+ N+N ++++
Sbjct: 12  QLFFIQIVLIIVMGALMTYGPEANVNLLKNR 42


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 282 EKCLQSFPRNGKM 244
           EK ++SFPR G +
Sbjct: 144 EKLVESFPRGGSL 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,708
Number of Sequences: 438
Number of extensions: 2803
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)