BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbS20879 (568 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 24 0.93 AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 24 0.93 DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein. 23 2.8 AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 21 8.6 >AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule AbsCAM-Ig7B protein. Length = 1923 Score = 24.2 bits (50), Expect = 0.93 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Frame = -1 Query: 316 LSKQNLRVLSLRKMS-SIFSSQWQDETMQSNKTSDFFI 206 LS+ + SL+K+ + SS W + Q+N +SD+ I Sbjct: 1884 LSEAECDIDSLKKLKLGLRSSLWSRPSTQNNPSSDYSI 1921 Score = 23.0 bits (47), Expect = 2.1 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Frame = +2 Query: 74 QRLPHPSNRNALL-LHGRNRQGGGTYPCGLTR 166 ++LP ++ LL L+G NR+ G Y C + R Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRR 403 >AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member AbsCAM-Ig7A protein. Length = 1919 Score = 24.2 bits (50), Expect = 0.93 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Frame = -1 Query: 316 LSKQNLRVLSLRKMS-SIFSSQWQDETMQSNKTSDFFI 206 LS+ + SL+K+ + SS W + Q+N +SD+ I Sbjct: 1880 LSEAECDIDSLKKLKLGLRSSLWSRPSTQNNPSSDYSI 1917 Score = 23.0 bits (47), Expect = 2.1 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Frame = +2 Query: 74 QRLPHPSNRNALL-LHGRNRQGGGTYPCGLTR 166 ++LP ++ LL L+G NR+ G Y C + R Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRR 403 >DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein. Length = 471 Score = 22.6 bits (46), Expect = 2.8 Identities = 9/31 (29%), Positives = 18/31 (58%) Frame = -1 Query: 523 QLLNLHSILFIFYFTLILYNPK*NINEIRSK 431 QL + +L I L+ Y P+ N+N ++++ Sbjct: 12 QLFFIQIVLIIVMGALMTYGPEANVNLLKNR 42 >AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. Length = 429 Score = 21.0 bits (42), Expect = 8.6 Identities = 7/13 (53%), Positives = 10/13 (76%) Frame = -2 Query: 282 EKCLQSFPRNGKM 244 EK ++SFPR G + Sbjct: 144 EKLVESFPRGGSL 156 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 138,708 Number of Sequences: 438 Number of extensions: 2803 Number of successful extensions: 6 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6 length of database: 146,343 effective HSP length: 54 effective length of database: 122,691 effective search space used: 16440594 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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