Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20879
         (568 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35110.1 68418.m04154 hypothetical protein predicted protein,...    28   5.0  
At5g66850.1 68418.m08428 protein kinase family protein contains ...    27   8.7  

>At5g35110.1 68418.m04154 hypothetical protein predicted protein,
           Arabidopsis thaliana
          Length = 112

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 71  LQRLPHPSNRNALLLHGRNRQGGGTYPCGLTRGPTTSKPIPKN 199
           +QR P+  N    L H R+R GG   PC   R      PI ++
Sbjct: 25  IQRRPYHKNCGCAL-HERSRGGGSATPCRHGRSEVVMFPIQRS 66


>At5g66850.1 68418.m08428 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain; identical
           to cDNA MAP3K gamma protein kinase GI:2315152
          Length = 716

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 74  QRLPHPSNRNALLLHGRNRQGGGTYPCGLTRGPTTSKPIPKN 199
           ++L H ++ + LL   R      T+  GLTR P+    +P++
Sbjct: 57  RKLRHLTDDDVLLGERRASTSSSTFDSGLTRSPSAFTAVPRS 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,469,034
Number of Sequences: 28952
Number of extensions: 194933
Number of successful extensions: 356
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)