Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20878
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    30   0.36 
SPAC12B10.15c |||ribonuclease H2 complex subunit|Schizosaccharom...    29   0.83 
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    28   1.5  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    27   3.4  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   3.4  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    26   5.9  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    26   5.9  
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p...    25   7.8  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    25   7.8  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    25   7.8  
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce...    25   7.8  

>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +3

Query: 330 LTREVWNTPRNNDPIQMDSERAQQVMSAMANFSLPQTSIPEWARSISEDQWKRTLNEQIQ 509
           L  E+WN P++ D   +D   A+QV    ANF     S  +  R  S + +K  L +Q +
Sbjct: 165 LDDELWNFPKDVDKDMIDESIAEQVGVVYANF----PSYHKMCRFFSRNFYKHPLMQQYE 220


>SPAC12B10.15c |||ribonuclease H2 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 459 RSISEDQWKRTLNEQIQ-KSRVTVNLALY 542
           RS  +DQWKR + E IQ  S+V  N +LY
Sbjct: 118 RSSEKDQWKRGVLEWIQFASKVKFNCSLY 146


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +1

Query: 166 GPQLEDSDDENEYVGYEPLPQGPEISYSDQIWKKMIRILSNHRTIS 303
           G  +ED D ENE + Y+P+P   EIS  D+I  +  +   N R ++
Sbjct: 555 GSHVED-DVENEIIWYKPVPIKFEIS-KDEIHPRGYKCGGNERNLT 598


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 292 RTISHLLNQWKLF*QGRYGIHPETMIQYKWIVNEHNR 402
           R+ISHL ++ +     RY  HP+      W+ NE N+
Sbjct: 195 RSISHLKSKSR----SRYASHPDLQALNTWMTNEGNQ 227


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +1

Query: 112 ENNPHELSPPPRHDLLMNGPQLEDSDDENEYVGYEPLPQGPEISYSDQIWKKMI 273
           EN P EL P  R + + +G  L +S+    +     LP+G E+++ +  W K+I
Sbjct: 474 ENFPDELVP--RVERISSG-HLVNSELRQRFKYMAHLPEGCEVAFIECDWSKII 524


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +3

Query: 387 ERAQQVMSAMANFSLPQTSIPEWARSI 467
           E+ ++ ++++ N  LP+ S+P W   I
Sbjct: 128 EKTRETVASVTNVQLPEISMPLWLEKI 154


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 148 HDLLMNGPQLEDSDDENE-YVGYEPLPQGPEISYSDQIWKKMIRILSNH 291
           +D+ MNG  LEDSD  +E Y+  E       I  S  +  K+I    +H
Sbjct: 406 YDVEMNGKSLEDSDSLSELYLTNEEKKMASIIKDSVNVQIKLIESKLSH 454


>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 333 TREVWNTPRNNDPIQMDSERAQQVMSAMANFSLPQTSIPEW 455
           TR  W T  N+D    D  R  +V + + N S   T+I  +
Sbjct: 55  TRSEWRTFSNSDEASGDPSRVGKVANPLLNGSQLDTTISSY 95


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +1

Query: 106 PPENNPHELSPPPRHDLLMNGPQLEDSDDE--NEYVGYEPLPQ 228
           PP   P++ +P P   L    PQ   S  E  N  V  E +P+
Sbjct: 218 PPVTRPNQYNPEPNFSLSSGYPQQHFSQPELQNRNVHLETVPE 260


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +1

Query: 100 PDPPENNPHELSPPPR-HDLLMNGPQLEDSDDENEYVGYEPLPQGPEISY 246
           P P  ++  ++S PP     LM+ P   +SD+++  +G+ P P G +I +
Sbjct: 523 PSPSFSSLPDVSLPPIVKPNLMSEPTPTNSDEKSHALGFPP-PPGQKIEF 571


>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 238

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 544 LKYILFLLKLVIEGILDQPYRFIFKKIQEFSLN 642
           LK+    L L +EG+ D+  RFIF  I E   N
Sbjct: 144 LKFWEDYLGLKMEGVHDEVIRFIFTNIDEKDWN 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,183
Number of Sequences: 5004
Number of extensions: 62891
Number of successful extensions: 197
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)