Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20878
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0587 - 25878948-25879201,25879290-25879361,25881091-25881451 35 0.053
09_04_0351 + 16904075-16904738,16906285-16906366,16906533-169066... 31 1.1
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955... 30 1.5
07_03_0016 - 12474773-12475249 29 3.5
01_05_0376 - 21623517-21623996 28 6.0
01_01_1111 - 8791925-8792649,8793506-8793890,8794341-8794618,879... 28 6.0
03_02_1023 + 13265179-13265330,13265526-13265637,13265752-132660... 28 8.0
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 28 8.0
02_04_0382 - 22501041-22501279,22501717-22501810 28 8.0
>03_05_0587 - 25878948-25879201,25879290-25879361,25881091-25881451
Length = 228
Score = 35.1 bits (77), Expect = 0.053
Identities = 24/70 (34%), Positives = 31/70 (44%)
Frame = +1
Query: 49 SPIASRLTFWPKMVCDGPDPPENNPHELSPPPRHDLLMNGPQLEDSDDENEYVGYEPLPQ 228
+P AS +T P V PP PPP + L PQ D D N+ VG PLP+
Sbjct: 123 APPASIVTAPPPPVAFRRKPPAREAPP--PPPAAEKLSPPPQQHDDSDHNKRVG--PLPR 178
Query: 229 GPEISYSDQI 258
G Y+ +
Sbjct: 179 GSPPPYAQSV 188
>09_04_0351 +
16904075-16904738,16906285-16906366,16906533-16906697,
16906811-16906929,16906930-16907156
Length = 418
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/79 (27%), Positives = 36/79 (45%)
Frame = -1
Query: 415 IADITCCARSLSICIGSLFLGVFHTSLVKTTSTGSIGGILFGGCXXXXXXXXXSDQNMKS 236
+AD TC S+ S+ LG F +L+ T+S S+ +GG + +K
Sbjct: 257 LADSTCS--SMQCANSSMMLGNF--TLLMTSSGCSVTSCSYGGFVNGTILTTLTTA-LKP 311
Query: 235 QVPGVMVHIQHIHFRHHCL 179
Q PG+ + ++ H CL
Sbjct: 312 QCPGIKFVLNYVSVHHFCL 330
>07_03_0919 -
22594980-22595111,22595398-22595427,22595522-22595587,
22596021-22596107,22596868-22596921,22597696-22597762,
22598099-22598215,22598536-22598637,22598784-22598902,
22598966-22599049,22599220-22599354,22599470-22599505,
22599581-22599700,22600557-22600645,22601507-22601596,
22601629-22601802,22602135-22602235,22602323-22602363,
22602872-22602883
Length = 551
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +3
Query: 357 RNNDPIQMDSERAQQVMSAMANFSLPQTSIPEWARSISED---QWKRTLNE 500
+NNDP+ + AQQ M A + +T + ++RS D +W+R E
Sbjct: 481 KNNDPLHQKTAEAQQQMRVKAGLDM-RTKVRRYSRSELRDFQKRWERATRE 530
>07_03_0016 - 12474773-12475249
Length = 158
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +3
Query: 330 LTREVWNTPRNNDPIQMDSERAQQVMSAMANFSLPQTSI--PEWARSISEDQWK 485
+TR W T ++ P+QM + A P+ SI WA S SED W+
Sbjct: 4 MTRNEWETSSSSTPVQMYEAGWEPTGDAPGWTQAPRHSIRVSSWA-SASEDWWR 56
>01_05_0376 - 21623517-21623996
Length = 159
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 393 AQQVMSAMANFSLPQTSIPEWARSISEDQW 482
A +++ AM P P WA S+ EDQW
Sbjct: 116 AARIVDAMRGVEFPGAP-PPWAGSVPEDQW 144
>01_01_1111 -
8791925-8792649,8793506-8793890,8794341-8794618,
8794998-8795163
Length = 517
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/64 (18%), Positives = 32/64 (50%)
Frame = +3
Query: 339 EVWNTPRNNDPIQMDSERAQQVMSAMANFSLPQTSIPEWARSISEDQWKRTLNEQIQKSR 518
E+W+ N +P Q + ++ + P+TS+P++ + ++ + + +N+ S
Sbjct: 363 ELWSPQANAEPSQSNEAADNGIIRRYRSMKTPETSVPQF-KGKTQAKMRVGINKMATSSS 421
Query: 519 VTVN 530
++N
Sbjct: 422 ESIN 425
>03_02_1023 + 13265179-13265330,13265526-13265637,13265752-13266048,
13266361-13266623,13267637-13267847,13268420-13268590,
13268671-13268748,13269275-13269520,13269763-13271868,
13272122-13273904,13274113-13274216,13274752-13275108,
13275210-13275328,13276175-13276436,13276669-13276893,
13277075-13277214,13278087-13278159,13278431-13278532,
13278647-13279018,13279183-13279230,13279516-13279900,
13280440-13280558
Length = 2574
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 49 SPIASRLTFWPKMVCDGPDPPENNPHELSPPPRHDLLMNGPQLEDSDDE 195
SP+AS+ + PK +PP + P +L D M DS++E
Sbjct: 1772 SPLASQSSDPPKQT-KSSEPPSSGPSKLESTSTSDTAMKTSNSSDSEEE 1819
>03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 106 PPENNPHELSPPPRHDLLMNGPQLEDSDDENEYVGYEPLPQGPEIS 243
PP + E+SP R +L + P ++ D+ +EY P+P+ E+S
Sbjct: 1173 PPISGSKEISPQSR-TILESSP--DNQDNGHEYPSPPPIPESIELS 1215
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 94 DGPDPPENNPHELSPPPRHDLLMNGPQLEDSDDENEYVGYEPLP 225
DG +PPE+ HE PPP + P + D + Y+P P
Sbjct: 34 DGDNPPESPDHE-DPPPSPEYYDPPPSPDYYDPPHSPDYYDPPP 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,704,885
Number of Sequences: 37544
Number of extensions: 380431
Number of successful extensions: 1228
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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