Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20878
(688 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0) 31 0.66
SB_30271| Best HMM Match : CM_2 (HMM E-Value=9.5) 30 2.0
SB_11360| Best HMM Match : PDZ (HMM E-Value=0) 30 2.0
SB_58282| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32) 29 2.7
SB_17069| Best HMM Match : Transposase_8 (HMM E-Value=7.7) 29 2.7
SB_38097| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_22889| Best HMM Match : Adeno_VII (HMM E-Value=2.3) 29 2.7
SB_58522| Best HMM Match : Spb1_C (HMM E-Value=4) 29 4.7
SB_49250| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_42688| Best HMM Match : PB1 (HMM E-Value=0.12) 28 6.2
SB_29502| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_31971| Best HMM Match : Tyrosinase (HMM E-Value=3e-06) 28 8.1
SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11) 28 8.1
>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
Length = 600
Score = 31.5 bits (68), Expect = 0.66
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +3
Query: 348 NTPRNNDPIQMDSERAQQVMSAMANFSLPQTSIPEWARSISEDQWKRTLNEQIQKS 515
N P+ D D A Q+ + +PQ S+P AR I+ED+ K + Q + S
Sbjct: 132 NKPKQGDSEAADLANAVQLQGPV--MPIPQESVPIKARPITEDEKKSASSRQCESS 185
>SB_30271| Best HMM Match : CM_2 (HMM E-Value=9.5)
Length = 665
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/65 (29%), Positives = 34/65 (52%)
Frame = +3
Query: 330 LTREVWNTPRNNDPIQMDSERAQQVMSAMANFSLPQTSIPEWARSISEDQWKRTLNEQIQ 509
+T +VW +P + M +E A S++A + L TS+PE + + + + +NE+
Sbjct: 510 VTAQVWFSPYTCTYMNMSAELASVFSSSVAPWPLSSTSVPE--VTSRKRRRSQKINEEKT 567
Query: 510 KSRVT 524
K R T
Sbjct: 568 KRRRT 572
>SB_11360| Best HMM Match : PDZ (HMM E-Value=0)
Length = 625
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +1
Query: 55 IASRLTFWPKMVCDGPDPPENNPHELSPPPRHDLLMNGPQLEDSDDENEYVGYEPLPQGP 234
+ SRLT + D P P + PPP +++ P S EN V + P P+ P
Sbjct: 98 VVSRLTAYYSEQTDSAPSPPTLPKQTPPPPTPEVIETAP--SPSPGENGEVNHVP-PESP 154
>SB_58282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 433
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 100 PDPPENNPHELSPPPRHDLLMNGPQLEDSDDE 195
PDP E NP+E P P D + + + D+E
Sbjct: 72 PDPNEGNPNENVPDPGEDAFFDALEADIGDEE 103
>SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32)
Length = 1074
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Frame = +1
Query: 97 GPD-PPENNPHELSPPPRHDLLMNGPQLEDSDDENEYVGYEPLPQGPEISYSDQIWKKMI 273
GPD P L P + + P+L + +PL GP ++ W +
Sbjct: 603 GPDRKPSGAKRFLGNPKSYIIFPRTPKLRNVKSITISAWVKPLSNGPIFHFNPPGWGVHV 662
Query: 274 RILSNHRTISHLLNQWKLF*QGRYGIHPETMIQYKW 381
I++N++ + +++ K + +Y I P ++ + +W
Sbjct: 663 WIVNNNQLFARFVSK-KTRKRVKYVISPRSLRKNRW 697
>SB_17069| Best HMM Match : Transposase_8 (HMM E-Value=7.7)
Length = 733
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 334 QGRYGI-HPETMIQYKWIVNEHNRLCPQW 417
QG G+ + + I++KWI N N++ PQW
Sbjct: 283 QGLLGLLNDQDPIKFKWIKNRINQMWPQW 311
>SB_38097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1099
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 82 KMVCDGPDPPENNPHELSPPPR-HDLLMNGPQLEDSDDENEYVGYEPLPQGPEISYSD 252
+++ D + E+ + PP HD L++ PQ + D+ +Y+ Y + E+S+ D
Sbjct: 19 EVLTDHEEGGEDEESGVLPPDFFHDGLVDSPQFKSLDELFDYINYYSNLEDEEVSFED 76
>SB_22889| Best HMM Match : Adeno_VII (HMM E-Value=2.3)
Length = 347
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +3
Query: 333 TREVWNTPRNNDPIQMDSERAQQVMSAMANFSLPQTSIPEWARSISEDQWKRTLNEQIQK 512
T +VW +P + M +E A S++A + L TS+PE + + + + +NE+ K
Sbjct: 278 TAQVWFSPYTCTYMNMSAELASVFSSSVAPWPLSSTSVPE--VTSRKRRRSQKINEEKTK 335
Query: 513 SRVT 524
R T
Sbjct: 336 RRRT 339
>SB_58522| Best HMM Match : Spb1_C (HMM E-Value=4)
Length = 299
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 100 PDPPENNPHELSPPPRHDLLMNGPQLEDSDDE 195
PDP E NP+E P P D + + D+E
Sbjct: 129 PDPNEGNPNENVPDPGEDAFFDALAADIEDEE 160
>SB_49250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 638
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 336 REVWNTPRNNDPIQMDSERAQQVMSA 413
R++W T RN D I D E A+++ A
Sbjct: 133 RKLWQTDRNQDQISKDEEYARKLQEA 158
>SB_42688| Best HMM Match : PB1 (HMM E-Value=0.12)
Length = 1338
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Frame = +1
Query: 94 DGPDPPENNPHELSPPP------RHDLL-MNGPQLEDSDDENEYVGYEPLP 225
DGP PP ++ H LS R +LL M +D+DD++EY E LP
Sbjct: 903 DGP-PPTHDAHSLSDAALSDWVSREELLSMVKTSSDDNDDKSEYHSSEELP 952
>SB_29502| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 94 DGPDPPENNPHELSPPPRHDLLMNGPQL 177
+G DP PH P R D + GPQL
Sbjct: 298 EGQDPNSQGPHFARTPIRTDPISQGPQL 325
>SB_31971| Best HMM Match : Tyrosinase (HMM E-Value=3e-06)
Length = 364
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 82 KMVCDGPDP-PENNPHELSPPPRHDLLMNGPQLEDSDDENEYVGYE 216
K+V D P+P P + ++ S P + + +D DDEN +E
Sbjct: 310 KVVYDDPEPRPRDEEYDPSVPDARPIFLCDDDDDDDDDENHQKYHE 355
>SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
Length = 1704
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +1
Query: 46 RSPIASRLTFWPKMVCDGPDPP-ENNPHELSPPPRHDLLMNGPQLEDSDDE-NEYVGYEP 219
R ++S ++ K+V PP +++P +S + + P ++ D E + + EP
Sbjct: 947 RDEVSSVMSPTGKVVSSSDVPPRKHSPPCVSQSSSLSVPVQEPIVDGHDVEVSSLLSKEP 1006
Query: 220 LPQGPEISYSD 252
LPQ P IS S+
Sbjct: 1007 LPQSPSISSSE 1017
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,934,685
Number of Sequences: 59808
Number of extensions: 456019
Number of successful extensions: 1208
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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