Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20878
(688 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110479-5|CAB60314.2| 397|Caenorhabditis elegans Hypothetical ... 31 1.0
U46673-7|AAC48154.1| 811|Caenorhabditis elegans Beta-catenin/ar... 30 1.8
U39472-1|AAK31395.1| 534|Caenorhabditis elegans Cytochrome p450... 30 1.8
AL110479-14|CAB60319.1| 417|Caenorhabditis elegans Hypothetical... 30 1.8
AF063646-1|AAC17424.1| 811|Caenorhabditis elegans beta-catenin/... 30 1.8
AF039710-6|AAB96688.1| 392|Caenorhabditis elegans Hypothetical ... 30 1.8
Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical pr... 29 2.4
U28943-10|AAA68362.1| 329|Caenorhabditis elegans Dehydrogenases... 29 3.1
Z19555-6|CAJ15163.1| 187|Caenorhabditis elegans Hypothetical pr... 29 4.1
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as... 29 4.1
AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical ... 29 4.1
Z81491-8|CAI46571.1| 182|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z36719-2|CAA85317.2| 421|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z81128-8|CAB03402.1| 811|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z69634-6|CAD01081.2| 490|Caenorhabditis elegans Hypothetical pr... 28 7.2
U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body prot... 28 7.2
U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body prot... 28 7.2
U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body prot... 28 7.2
J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.ele... 28 7.2
Z81089-4|CAB03138.3| 425|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z19157-5|CAE18055.2| 177|Caenorhabditis elegans Hypothetical pr... 27 9.5
AL132948-29|CAD31829.1| 314|Caenorhabditis elegans Hypothetical... 27 9.5
>AL110479-5|CAB60314.2| 397|Caenorhabditis elegans Hypothetical
protein Y105C5B.7 protein.
Length = 397
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 358 ETMIQYKWIVNEHNRLCPQWQIFRYHKPQY 447
ET QYKW+ + + +W I +H+P Y
Sbjct: 226 ETQAQYKWLQEDLAQNKKKWTIVMFHRPWY 255
>U46673-7|AAC48154.1| 811|Caenorhabditis elegans
Beta-catenin/armadillo relatedprotein 1 protein.
Length = 811
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 100 PDPPENNPHELSPPPRHDLLMN-GPQLEDSD 189
P PP+ N ++ SPP +DL N GP SD
Sbjct: 772 PTPPQYNSYDRSPPVYNDLPSNPGPSSHSSD 802
>U39472-1|AAK31395.1| 534|Caenorhabditis elegans Cytochrome p450
family protein 23A1 protein.
Length = 534
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +2
Query: 575 SLKGFLISHIDSYSKRFKNFL*TTVTLSGGSHALV 679
++K + I H DS+S R++NF+ T ++ GS+ +V
Sbjct: 110 TIKKYFIQHADSFSNRWRNFV--TDSIMEGSNGIV 142
>AL110479-14|CAB60319.1| 417|Caenorhabditis elegans Hypothetical
protein Y105C5B.15 protein.
Length = 417
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 358 ETMIQYKWIVNEHNRLCPQWQIFRYHKPQY 447
E QYKW+ + + QW I +H+P Y
Sbjct: 248 EAQAQYKWLQADLAKNKAQWTIVMFHRPWY 277
>AF063646-1|AAC17424.1| 811|Caenorhabditis elegans
beta-catenin/armadillo homologBAR-1 protein.
Length = 811
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 100 PDPPENNPHELSPPPRHDLLMN-GPQLEDSD 189
P PP+ N ++ SPP +DL N GP SD
Sbjct: 772 PTPPQYNSYDRSPPVYNDLPSNPGPSSHSSD 802
>AF039710-6|AAB96688.1| 392|Caenorhabditis elegans Hypothetical
protein C46E10.3 protein.
Length = 392
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +1
Query: 46 RSPIASRLTFWPKMVCDGPDPPENNPHELSPPPRHDLLMNGPQLEDSDDENEYVGYEPLP 225
R P A L P+++ + P PEN+ S PP +L P ++ GY P
Sbjct: 37 REPSAEPLPKLPRVIKEEPYFPENSEQASSSPPVPQILCASPNGPVIHGKSLVAGYRPDD 96
Query: 226 QGP 234
+ P
Sbjct: 97 RTP 99
>Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical
protein C15C6.3 protein.
Length = 541
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1
Query: 100 PDPPENNPHELSPPP 144
P PPEN P E PPP
Sbjct: 481 PPPPENEPEEFPPPP 495
>U28943-10|AAA68362.1| 329|Caenorhabditis elegans Dehydrogenases,
short chain protein7 protein.
Length = 329
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 355 PETMIQYKWI-VNEHNRLCPQWQIFRYHKPQYLNGLGAYQKINGN 486
PE+ W + +++C F+ H+ +Y NG+ Y GN
Sbjct: 187 PESSSDASWFRLYSRSKMCNMLVAFKLHRDEYHNGISTYSVHPGN 231
>Z19555-6|CAJ15163.1| 187|Caenorhabditis elegans Hypothetical
protein F02A9.7 protein.
Length = 187
Score = 28.7 bits (61), Expect = 4.1
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = +1
Query: 430 YHKPQYLNGLGAYQKINGNV---HLMNKYKNQE*QLTWHCTLKYILFLLKLVIEGILDQP 600
YHK +G Y G+ H ++Y NQ+ W C L + FL L+I GI D
Sbjct: 92 YHKGDGFMIIGHYFCPEGSCLVDHTRSEY-NQKID-KWCCALVLLGFLFFLLISGIADTI 149
Query: 601 YRFIFKKI 624
+++ KK+
Sbjct: 150 FKWTKKKL 157
>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
assigned gene nameprotein 77 protein.
Length = 1004
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 100 PDPPENNPHELSPPPRHDLLMNGPQLEDSDD 192
P PP P LSPPP + + P +S +
Sbjct: 31 PPPPHRKPASLSPPPDDENTIRPPSSSESSE 61
>AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical
protein Y53C10A.4 protein.
Length = 908
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 127 ELSPPPRHD--LLMNGPQLEDSDDENEYVGYEP 219
E+S PP +D L+ + + ED DDE+E Y P
Sbjct: 514 EISEPPTNDERLVFSSSEDEDDDDEDELRVYRP 546
>Z81491-8|CAI46571.1| 182|Caenorhabditis elegans Hypothetical
protein D1086.12a protein.
Length = 182
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 298 ISHLLNQWKLF*QGRYGIHPETMIQYKWIVNEHNRLCPQWQIFR 429
IS L WKLF + + PET+ N+ N +C + I R
Sbjct: 46 ISQTLGNWKLFFEAHHWGSPETLNLTSEEFNQINNICEREAISR 89
>Z36719-2|CAA85317.2| 421|Caenorhabditis elegans Hypothetical
protein C06C3.4 protein.
Length = 421
Score = 28.3 bits (60), Expect = 5.4
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 15/97 (15%)
Frame = -1
Query: 553 YILTYNARLTVTLDF-CICSLSVRFH*SSDMLRAHSGIEVCGS-----EKFAIADITCCA 392
+I+ + + +DF IC R S + RA + + GS E+ A+A+ T CA
Sbjct: 11 HIVFVSVVFSADIDFPLICDKGYRV---SSINRAKTAYSLLGSLTVECEQIALAESTNCA 67
Query: 391 RSLSI---------CIGSLFLGVFHTSLVKTTSTGSI 308
S+ C G+ +LG FH L++ T+ ++
Sbjct: 68 PQQSVPKCTGLLEGCTGNTWLGGFHVYLLENTTQAAV 104
>Z81128-8|CAB03402.1| 811|Caenorhabditis elegans Hypothetical
protein T23D8.9a protein.
Length = 811
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 115 NNPHELSPPPRHDLLMNGPQLEDSDDENEYVGYEPLPQGPEISYSDQI 258
NNPH+ PPP ++ + S E LPQ PE+++ Q+
Sbjct: 391 NNPHDQPPPPTGLIIKLNAVMIGSYRLIAGQNPETLPQNPELAHLIQV 438
>Z69634-6|CAD01081.2| 490|Caenorhabditis elegans Hypothetical
protein B0001.8 protein.
Length = 490
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/71 (25%), Positives = 28/71 (39%)
Frame = +1
Query: 139 PPRHDLLMNGPQLEDSDDENEYVGYEPLPQGPEISYSDQIWKKMIRILSNHRTISHLLNQ 318
PP DLL +E DDE +P + +IWK + R + NQ
Sbjct: 39 PPNEDLLSRWVGVELDDDEIHARKVTVMPD----RFESRIWKAFAEVKVEIRLDGNFQNQ 94
Query: 319 WKLF*QGRYGI 351
+ +F +G+
Sbjct: 95 FNVFYNSYFGL 105
>U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body protein
1, isoform b protein.
Length = 369
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 94 DGPDPPENNPH-ELSPPPRHDLLMNGPQLEDSDDENEYVGYEPLPQ 228
D P PP P ELSPPPR P+ ++ ++ + PLPQ
Sbjct: 143 DIPAPPRPPPPVELSPPPRPP---PPPEYDEEEETRAFWERYPLPQ 185
>U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body protein
1, isoform a protein.
Length = 1010
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 94 DGPDPPENNPH-ELSPPPRHDLLMNGPQLEDSDDENEYVGYEPLPQ 228
D P PP P ELSPPPR P+ ++ ++ + PLPQ
Sbjct: 784 DIPAPPRPPPPVELSPPPRPP---PPPEYDEEEETRAFWERYPLPQ 826
>U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body protein
1, isoform c protein.
Length = 999
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 94 DGPDPPENNPH-ELSPPPRHDLLMNGPQLEDSDDENEYVGYEPLPQ 228
D P PP P ELSPPPR P+ ++ ++ + PLPQ
Sbjct: 784 DIPAPPRPPPPVELSPPPRPP---PPPEYDEEEETRAFWERYPLPQ 826
>J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein (
C.elegans vinculin (deb-1) gene, complete cds. ).
Length = 1010
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 94 DGPDPPENNPH-ELSPPPRHDLLMNGPQLEDSDDENEYVGYEPLPQ 228
D P PP P ELSPPPR P+ ++ ++ + PLPQ
Sbjct: 784 DIPAPPRPPPPVELSPPPRPP---PPPEYDEEEETRAFWERYPLPQ 826
>Z81089-4|CAB03138.3| 425|Caenorhabditis elegans Hypothetical
protein F53H4.5 protein.
Length = 425
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 52 PIASRLTFWPKMVCDGPDPPENNPHELSP 138
P A R + M+ DGP+PP H L+P
Sbjct: 349 PHAKRPSLTTSMLEDGPEPPSTVQHLLTP 377
>Z19157-5|CAE18055.2| 177|Caenorhabditis elegans Hypothetical
protein ZC84.7 protein.
Length = 177
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -2
Query: 513 IFVFVH*VYVSIDLLICSEPIQVLRFVVAKNLPLRT*PVVLVHYPFVLDHCF 358
+F+ + V + +LI E I L V +++PL P +L F L CF
Sbjct: 23 VFIGISSVAIFFAILIIVENIIFLSIVSKRSIPLLLIPYILSWVLFFLGFCF 74
>AL132948-29|CAD31829.1| 314|Caenorhabditis elegans Hypothetical
protein Y39B6A.37 protein.
Length = 314
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 372 IQMDSERAQQVMSAMANFSLPQTSIPEW 455
I +D ++ Q+ +AMANF LP + P W
Sbjct: 273 IPLDGDKLAQISAAMANFQLP--TPPGW 298
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,941,051
Number of Sequences: 27780
Number of extensions: 359441
Number of successful extensions: 1021
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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