Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20878
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07020.1 68414.m00747 expressed protein                             35   0.044
At2g28440.1 68415.m03455 proline-rich family protein contains pr...    31   0.54 
At4g23560.1 68417.m03394 glycosyl hydrolase family 9 protein sim...    29   2.2  
At3g45230.1 68416.m04881 hydroxyproline-rich glycoprotein family...    29   2.9  
At3g15605.1 68416.m01978 hypothetical protein                          29   2.9  
At2g34830.1 68415.m04276 WRKY family transcription factor              29   3.8  
At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding ...    29   3.8  
At4g34900.1 68417.m04949 xanthine dehydrogenase, putative simila...    28   5.0  
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t...    28   5.0  
At3g18810.1 68416.m02389 protein kinase family protein contains ...    28   5.0  
At1g28200.1 68414.m03461 GRAM domain-containing protein / ABA-re...    28   5.0  
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH...    27   8.8  
At1g51460.1 68414.m05792 ABC transporter family protein similar ...    27   8.8  

>At1g07020.1 68414.m00747 expressed protein
          Length = 147

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +3

Query: 387 ERAQQVMSAMANFSLPQTSIPEWARSISEDQW 482
           E A +VM AM   S P T+ P+WA  ++ED+W
Sbjct: 105 ENAVRVMEAMRAISFPGTA-PDWASDVNEDRW 135


>At2g28440.1 68415.m03455 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965;
           contains similarity to vegetative cell wall protein gp1
           [Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420; +
          Length = 268

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +1

Query: 94  DGPDPPENNPHELSP-PPRHDLLMNGPQLEDSDDENEYVGYEPLPQGP 234
           D P PP ++P   SP PP      N PQ   S  + E +   P P  P
Sbjct: 102 DSPQPPSSSPEADSPLPPSSSPEANSPQSPASSPKPESLADSPSPPPP 149



 Score = 28.3 bits (60), Expect = 5.0
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
 Frame = +1

Query: 79  PKMVCDGPDPPENNPHELSP-PPRH--DLLMNGPQLEDSDDENE-YVGYEPLP-QGPEIS 243
           P+ + D P PP   P   SP  P +     +  P  +DSDD+ E    Y P P   PE+ 
Sbjct: 137 PESLADSPSPPPPPPQPESPSSPSYPEPAPVPAPSDDDSDDDPEPETEYFPSPAPSPELG 196

Query: 244 YSDQI 258
            +  I
Sbjct: 197 MAQDI 201


>At4g23560.1 68417.m03394 glycosyl hydrolase family 9 protein
           similar to cellulase GI:1039431 from [Phaseolus
           vulgaris]
          Length = 479

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 517 LDFCICSLSVRFH*SSDMLRAHSGIEVCGSEKFAIADITCCARS 386
           L +   + +V FH S  + +A  G   CGS KF ++ I   A+S
Sbjct: 327 LQYVTTATTVLFHYSKTLTKAGVGSIQCGSTKFTVSQIRNFAKS 370


>At3g45230.1 68416.m04881 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965; related to vegetative cell wall
           protein gp1 [Chlamydomonas reinhardtii]
           gi|12018147|gb|AAG45420
          Length = 175

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 106 PPE-NNPHELSPPPRHDLLMNGPQLEDSDDENEYVGYEPLPQGPEISYSD 252
           PPE    H  SP P +   ++ P   DS   +      P P+  ++++SD
Sbjct: 63  PPEPETEHSPSPSPANSPSVSPPLPNDSQSPSSSASPSPSPEASDVNHSD 112


>At3g15605.1 68416.m01978 hypothetical protein
          Length = 543

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 136 PPPRHDLLMNGPQLEDSDDENEYVGYEPLPQGPEI 240
           P  +  L++N P+ +DSDD+    G + L + P +
Sbjct: 311 PSKKRKLILNTPETDDSDDQGPQSGEKKLIKNPPL 345


>At2g34830.1 68415.m04276 WRKY family transcription factor
          Length = 427

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +1

Query: 88  VCDGPDPPEN-NPHELSPPPRHDLLMNGPQLEDS 186
           V   P PPE  +P  +SPPP  DL +  P    S
Sbjct: 20  VSPSPGPPEGPSPSSMSPPPTSDLHVEFPSAATS 53


>At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding
           subunit ClpX, putative similar to CLP protease
           regulatory subunit CLPX GI:2674203 from [Arabidopsis
           thaliana]
          Length = 656

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 64  RLTFWPKMVCDGPDPPENNPHELSPPPRHDLLMNGP 171
           R +FW  +   G +PPE    + SPPP H  L + P
Sbjct: 181 RSSFWDTLRSYGAEPPE----DWSPPPPHSPLNSSP 212


>At4g34900.1 68417.m04949 xanthine dehydrogenase, putative similar
           to xanthine dehydrogenase from Gallus gallus, PIR:XOCHDH
           [SP|P47990], from Calliphora vicina [SP|P08793];
           contains Pfam profile PF02738 Aldehyde oxidase and
           xanthine dehydrogenase, molybdopterin binding domain
          Length = 1364

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -1

Query: 355 GVFHTSLVKTTS--TGSIGGILFGGCXXXXXXXXXSDQNMKSQVPGVMVHIQHIHFRHHC 182
           G+ H +L++     TG+  G   GGC          D+  K+ VP   VH  + + RH+ 
Sbjct: 23  GLAHMTLLEYLRGLTGTKLGCGEGGCGSCTVMVSSYDRESKTCVPSYTVHTGNFYCRHYA 82

Query: 181 L 179
           +
Sbjct: 83  V 83


>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
           Lycopersicon esculentum, proline-rich cell wall protein
           [Medicago sativa] GI:3818416; contains Pfam profile
           PF00234 Protease inhibitor/seed storage/LTP family
          Length = 428

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 91  CDGPDPPENNPHELSPP 141
           CD  DPP+ +PH + PP
Sbjct: 26  CDCSDPPKPSPHPVKPP 42


>At3g18810.1 68416.m02389 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 700

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/80 (27%), Positives = 33/80 (41%)
 Frame = +1

Query: 1   QRYNFQILHDIL*KKRSPIASRLTFWPKMVCDGPDPPENNPHELSPPPRHDLLMNGPQLE 180
           Q+YN Q  H +   ++ P ++    W     + P PP     + SPPP    +  G    
Sbjct: 238 QQYNNQSDHVMNLSQQYPGSNGNNNW----MNSPPPPPPGSWQPSPPPPPPPVSGGMNGN 293

Query: 181 DSDDENEYVGYEPLPQGPEI 240
            SD  + Y G    P GP +
Sbjct: 294 SSDFSSNYSG----PHGPSV 309


>At1g28200.1 68414.m03461 GRAM domain-containing protein /
           ABA-responsive protein-related similar to ABA-responsive
           protein [Hordeum vulgare] GI:4103635; contains Pfam
           profile PF02893: GRAM domain
          Length = 259

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = +1

Query: 109 PENNPHELSPPPRHDLLMNGPQLEDSDDENEYVGYEPLPQGPEISYSDQI--WKKM 270
           P+ +P +++PPP   +           + N YV   P P+    S  D +  W KM
Sbjct: 36  PKLDPTDVTPPPPQPIPTGAAATTMPAESNPYVSPSPAPRNTMDSVKDTLGKWGKM 91


>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
           (MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
           repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
           thaliana}
          Length = 1324

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
 Frame = +1

Query: 79  PKMVCDGPDPPENNPHELSPPPRHDLLMNGPQL---EDSDDENEY------VGYEPLP-Q 228
           PK     P PP+  P +L+P P  +L    P       S  ++++      +G  P P Q
Sbjct: 56  PKSPSPSPSPPKKTP-KLNPNPSSNLPARSPSPGPDTPSPVQSKFKKPLLVIGQTPSPPQ 114

Query: 229 GPEISYSDQIWKKMIRI 279
              I+Y D++  K +R+
Sbjct: 115 SVVITYGDEVVGKQVRV 131


>At1g51460.1 68414.m05792 ABC transporter family protein similar to
           SP|Q9UNQ0 ATP-binding cassette, sub-family G, member 2
           (Placenta-specific ATP- binding cassette transporter)
           (Breast cancer resistance protein) {Homo sapiens};
           contains Pfam profile PF00005: ABC transporter
          Length = 678

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = -1

Query: 385 LSICIGSLF--LGVFHTSLVKTTSTGSIGGILFG 290
           LSIC+GS+F  +G  HT+++   ST + GG + G
Sbjct: 385 LSICVGSIFFNVGRNHTNVM---STAACGGFMAG 415


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,719,403
Number of Sequences: 28952
Number of extensions: 322723
Number of successful extensions: 1083
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)