Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20862
         (321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...   100   5e-23
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    96   1e-21
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    26   1.2  
SPAP11E10.01 |||ornithine cyclodeaminase family |Schizosaccharom...    25   2.1  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    25   2.8  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    24   5.0  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    24   6.6  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    24   6.6  
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe...    24   6.6  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    23   8.7  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    23   8.7  

>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score =  100 bits (240), Expect = 5e-23
 Identities = 45/83 (54%), Positives = 63/83 (75%)
 Frame = +3

Query: 6   LLKWEHATVTVCHSKTKNLSEITKTAEILVVAIGRPEMVRGSWIKPGAVVIDCGINAIED 185
           LL+  +ATVT+CHSKT+++++I +TA+I+V AIG P  V+  W+K G V ID GIN+I D
Sbjct: 180 LLEKANATVTLCHSKTESIADIVRTADIVVAAIGIPHFVKADWLKKGVVAIDVGINSIPD 239

Query: 186 PTKKSGQRLVGDVAYQEAVKVAS 254
            TKKSG RL GD+ ++ A +VAS
Sbjct: 240 ATKKSGYRLTGDIDFENAKEVAS 262



 Score = 37.9 bits (84), Expect = 4e-04
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = +2

Query: 254 AVTPVPGGXGPMTVAMLMRN 313
           A+TPVPG  GPMTVAML++N
Sbjct: 263 AITPVPGSVGPMTVAMLLQN 282


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 95.9 bits (228), Expect = 1e-21
 Identities = 45/84 (53%), Positives = 66/84 (78%), Gaps = 1/84 (1%)
 Frame = +3

Query: 6   LLKWEHATVTVCHSKTKNLSEITKTAEILVVAIGRPEMVRGSWIKPGAVVIDCGINAIED 185
           LL+ ++ATVTVCHSKTK+L +    A++++ A+G+PE VRG W+KPG+VV+D GINA++ 
Sbjct: 211 LLRKDNATVTVCHSKTKDLIQHISNADLVIAALGKPEFVRGEWLKPGSVVVDVGINAVQ- 269

Query: 186 PTKKSGQR-LVGDVAYQEAVKVAS 254
              ++G+R LVGDV ++ A KVAS
Sbjct: 270 ---RNGKRVLVGDVHFESASKVAS 290



 Score = 39.9 bits (89), Expect = 9e-05
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +2

Query: 254 AVTPVPGGXGPMTVAMLMRN 313
           ++TPVPGG GPMTVAMLM N
Sbjct: 291 SITPVPGGVGPMTVAMLMEN 310


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 127 ALGSSLEPSL*TVVSTLLRILQRKAGNV 210
           ALG+  +P L  +VST+L  L  K+ NV
Sbjct: 804 ALGTRCKPYLPQIVSTILYRLNNKSANV 831


>SPAP11E10.01 |||ornithine cyclodeaminase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 54  KNLSEITKTAEILVVA-IGRPEMVRGSWIKPG 146
           +NL    K ++I+  A + +  ++ GSWI PG
Sbjct: 192 QNLENAVKCSDIISSATLSKKPIIVGSWINPG 223


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 159 DCGINAIEDPTKKSGQRLVGDVA 227
           D G  +I++PT   GQR++G V+
Sbjct: 591 DGGDTSIDNPTSTDGQRILGYVS 613


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 161 VYNDGSRLDPRASDHLWTTDRHHQYF 84
           +  DGSR+  + S  +W +    QYF
Sbjct: 45  IVGDGSRVPRKQSQLIWNSKEVKQYF 70


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 160 TVVSTLLRILQRKAGNV*WATWHTRRRS 243
           T++    R L+ K  N+ W T H R+R+
Sbjct: 283 TILDYKARYLRNKTRNMKWHTIHERQRN 310


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 182 LNSVDTTVYNDGSRLDPRASDH 117
           L  VDT V + G   DP +S+H
Sbjct: 414 LEKVDTHVTSTGGESDPPSSEH 435


>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 405

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +3

Query: 132 WIKPGAVVIDCGINAI 179
           W +P AV++ CG +++
Sbjct: 248 WFRPEAVILQCGTDSL 263


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 106 VVQRWSEALGSSLEPSL*TVVSTLLRILQRKAGNV*WATWHTRRRS 243
           V++  +E++ S +  S       +    QR    V  AT HTRRRS
Sbjct: 135 VMKNRAESIFSPVTESFEAFTQGMQTTPQRAGAGVSTATSHTRRRS 180


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 15  WEHATVTVCHSKTKNLSEITKTAEIL 92
           W+ A   VCH K  + S+ T    +L
Sbjct: 884 WDVAKFEVCHQKFADYSDFTYGVSVL 909


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,238,224
Number of Sequences: 5004
Number of extensions: 21148
Number of successful extensions: 63
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)