Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20862
         (321 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0156 - 1086750-1086920,1087680-1087847,1087935-1088171,108...   102   5e-23
09_02_0466 + 9599389-9599662,9600324-9600643,9600950-9601186,960...    98   2e-21
05_01_0365 + 2865496-2865588,2865673-2865856,2866791-2866948,286...    95   1e-20
01_01_1103 - 8744873-8745724                                           31   0.27 
07_03_1031 - 23389263-23389541                                         30   0.35 
12_02_0923 - 24392892-24394148                                         28   1.9  
10_07_0082 - 12743179-12743283,12743380-12743561,12743910-12743967     28   1.9  
04_03_0840 - 20224333-20224403,20224782-20225046                       27   2.5  
02_02_0434 + 10196427-10196606,10197132-10197152,10197816-101978...    27   4.3  
08_01_0787 - 7611224-7611268,7611555-7611696,7613703-7613923           26   5.7  
06_01_0560 - 3977456-3977527,3978069-3978182,3978264-3978335,397...    26   7.6  
01_06_0357 - 28668894-28669238,28669510-28669537,28669578-286696...    26   7.6  
01_03_0295 + 14750162-14750369,14751601-14752019                       26   7.6  

>02_01_0156 -
           1086750-1086920,1087680-1087847,1087935-1088171,
           1088763-1089073,1089343-1089571
          Length = 371

 Score =  102 bits (245), Expect = 5e-23
 Identities = 46/84 (54%), Positives = 61/84 (72%)
 Frame = +3

Query: 6   LLKWEHATVTVCHSKTKNLSEITKTAEILVVAIGRPEMVRGSWIKPGAVVIDCGINAIED 185
           LL+  +ATV++ HS TK   EIT+ A+I++ A+G   +VRGSWIKPGA +ID GIN ++D
Sbjct: 257 LLQKANATVSIVHSNTKKPEEITRQADIVIAAVGVANLVRGSWIKPGAAIIDVGINPVDD 316

Query: 186 PTKKSGQRLVGDVAYQEAVKVASL 257
           P    G RLVGDV Y+EA K+A L
Sbjct: 317 PESPRGYRLVGDVCYEEASKIAGL 340



 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = +2

Query: 257 VTPVPGGXGPMTVAMLMRNT 316
           +TPVPGG GPMT+AML+ NT
Sbjct: 341 ITPVPGGVGPMTIAMLLSNT 360


>09_02_0466 +
           9599389-9599662,9600324-9600643,9600950-9601186,
           9601278-9601445,9601778-9601966
          Length = 395

 Score = 97.9 bits (233), Expect = 2e-21
 Identities = 46/83 (55%), Positives = 60/83 (72%)
 Frame = +3

Query: 6   LLKWEHATVTVCHSKTKNLSEITKTAEILVVAIGRPEMVRGSWIKPGAVVIDCGINAIED 185
           LL+  HATV++ H+ T N  EIT+ ++I++ A G   +VRGSW+K GAVVID G N IED
Sbjct: 275 LLQRHHATVSIIHAFTTNPEEITRQSDIVISAAGVANLVRGSWLKKGAVVIDVGTNPIED 334

Query: 186 PTKKSGQRLVGDVAYQEAVKVAS 254
           PT   G RL GDV ++EAVK+AS
Sbjct: 335 PTSDYGYRLTGDVCFEEAVKLAS 357



 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 15/21 (71%), Positives = 19/21 (90%)
 Frame = +2

Query: 254 AVTPVPGGXGPMTVAMLMRNT 316
           A+TPVPGG GP+T+AML+ NT
Sbjct: 358 AITPVPGGVGPVTIAMLLANT 378


>05_01_0365 +
           2865496-2865588,2865673-2865856,2866791-2866948,
           2867035-2867247,2867330-2867560
          Length = 292

 Score = 94.7 bits (225), Expect = 1e-20
 Identities = 45/82 (54%), Positives = 59/82 (71%)
 Frame = +3

Query: 6   LLKWEHATVTVCHSKTKNLSEITKTAEILVVAIGRPEMVRGSWIKPGAVVIDCGINAIED 185
           LLK + ATV++ HS+T N   I + A+I++ A G+  M++G WIKPGA VID G N+I D
Sbjct: 180 LLKAD-ATVSIVHSRTPNPESIVREADIVIAAAGQAMMIKGDWIKPGAAVIDVGTNSISD 238

Query: 186 PTKKSGQRLVGDVAYQEAVKVA 251
           PT+KSG RLVGDV + E  KVA
Sbjct: 239 PTRKSGYRLVGDVDFAEVSKVA 260



 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 16/20 (80%), Positives = 19/20 (95%)
 Frame = +2

Query: 257 VTPVPGGXGPMTVAMLMRNT 316
           +TPVPGG GPMTVAML++NT
Sbjct: 263 LTPVPGGVGPMTVAMLLKNT 282


>01_01_1103 - 8744873-8745724
          Length = 283

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = +3

Query: 105 GRPEMVRGS---WIKPGAVVIDCGINAIEDPTKKSGQRLVGDVA 227
           G P  V G    W KPG V    G++A+  P +  GQR  G  A
Sbjct: 152 GMPPTVAGESVVWCKPGVVAKLMGLDAVPVPVRGGGQRRGGAAA 195


>07_03_1031 - 23389263-23389541
          Length = 92

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 91  WWWRSVVQRWSEALGS 138
           WWWR+ VQR++EA  S
Sbjct: 34  WWWRATVQRFAEAEAS 49


>12_02_0923 - 24392892-24394148
          Length = 418

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 144 GAVVIDCGINAIEDPTKKSGQRLVGD 221
           G +V+D G N ++DP   S +R + D
Sbjct: 228 GLLVLDLGSNGVDDPPNASHRRCIAD 253


>10_07_0082 - 12743179-12743283,12743380-12743561,12743910-12743967
          Length = 114

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -3

Query: 178 IALIPQSITTAPGLIQEPRTISGRPIATTSISAVLVISLKFLVFE 44
           +A I   +TT  G++Q     S  P    +++ V+ ++  FL+F+
Sbjct: 65  VAAITVELTTGKGVLQNVGLTSPVPTVALALTGVVGVATAFLIFQ 109


>04_03_0840 - 20224333-20224403,20224782-20225046
          Length = 111

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 143 WSRRYRLWYQRY*GSYKEKRATFSGRRGIPGGGQSSFA 256
           W RR+   Y    GS +++R    GR+G  GGGQ S A
Sbjct: 46  WHRRWWWGYLAVDGSRRKER----GRKGGGGGGQGSLA 79


>02_02_0434 +
           10196427-10196606,10197132-10197152,10197816-10197877,
           10198784-10199036
          Length = 171

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 70  LLRQQKYWWWRSVVQRWSEAL 132
           L RQ+  WWW++ + RW++ +
Sbjct: 9   LTRQRATWWWQAAL-RWTDLI 28


>08_01_0787 - 7611224-7611268,7611555-7611696,7613703-7613923
          Length = 135

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 203 ATFSGRRGIPGGGQSSFAVTPVPGG 277
           A   GRRG  GGG + +AV  V GG
Sbjct: 9   AAAEGRRGEGGGGAARWAVGAVCGG 33


>06_01_0560 -
           3977456-3977527,3978069-3978182,3978264-3978335,
           3978428-3978497,3978608-3978705,3978791-3978992,
           3979074-3979141,3979960-3980358
          Length = 364

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -3

Query: 184 SSIALIPQSITTAPGLIQEPRTISGRPIATTSISAVLVIS 65
           SS +L+P    + PG     R  SGRP A  +    +  S
Sbjct: 31  SSRSLLPLPTASFPGATASRRLASGRPTAAAAFHTAVTAS 70


>01_06_0357 -
           28668894-28669238,28669510-28669537,28669578-28669635,
           28669836-28669916,28670395-28670526,28670609-28670926,
           28672495-28673317
          Length = 594

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = -3

Query: 220 SPTKRCPLFFVGSSIALIPQSITTAPGLIQEPRTISGRPIATTSISAVLVISLKFLVFEW 41
           SPT+   L F  SS  L+P S+  A  L   P T    P+A  +   +L+ S   L    
Sbjct: 44  SPTRALALLFPDSSARLLP-SLPPAASL---PATAVPSPLAAAACFVLLLPSSHLLFLSA 99

Query: 40  H 38
           H
Sbjct: 100 H 100


>01_03_0295 + 14750162-14750369,14751601-14752019
          Length = 208

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 79  QQKYWWWRSVVQRWSEALG 135
           +QK+WWW    Q WS  LG
Sbjct: 145 RQKWWWWG---QHWSCRLG 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,955,870
Number of Sequences: 37544
Number of extensions: 160861
Number of successful extensions: 620
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)