Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20862
         (321 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18696| Best HMM Match : THF_DHG_CYH_C (HMM E-Value=0)               92   1e-19
SB_49404| Best HMM Match : DUF11 (HMM E-Value=3.1e-31)                 32   0.090
SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.64 
SB_37200| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.5  
SB_19460| Best HMM Match : AAA (HMM E-Value=0)                         28   1.5  
SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22)                27   2.6  
SB_27422| Best HMM Match : Dynamin_N (HMM E-Value=3)                   27   3.4  
SB_3257| Best HMM Match : OCD_Mu_crystall (HMM E-Value=3.4e-08)        27   4.5  
SB_59115| Best HMM Match : Spectrin (HMM E-Value=0)                    27   4.5  
SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12)       27   4.5  
SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_22017| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-08)                 27   4.5  
SB_13495| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.9  
SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17)               26   5.9  
SB_54545| Best HMM Match : TIP49 (HMM E-Value=4.3)                     26   5.9  
SB_48497| Best HMM Match : THAP (HMM E-Value=0.00088)                  26   7.9  
SB_44616| Best HMM Match : rve (HMM E-Value=0.012)                     26   7.9  
SB_20652| Best HMM Match : OmpH (HMM E-Value=1.9)                      26   7.9  

>SB_18696| Best HMM Match : THF_DHG_CYH_C (HMM E-Value=0)
          Length = 119

 Score = 91.9 bits (218), Expect = 1e-19
 Identities = 39/70 (55%), Positives = 55/70 (78%)
 Frame = +3

Query: 21  HATVTVCHSKTKNLSEITKTAEILVVAIGRPEMVRGSWIKPGAVVIDCGINAIEDPTKKS 200
           +ATVT+CHS+TKNL E+   A+I+V AIG+P+ +    +K GA+V+D GIN I+D T+KS
Sbjct: 13  NATVTICHSRTKNLKEMCLQADIIVAAIGKPKFITADMVKEGAIVLDVGINRIDDATRKS 72

Query: 201 GQRLVGDVAY 230
           G+RLVGDV +
Sbjct: 73  GKRLVGDVDF 82



 Score = 31.9 bits (69), Expect = 0.12
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +2

Query: 257 VTPVPGGXGPMTVAMLMRNT 316
           +TPVPGG G MT+  LM NT
Sbjct: 92  ITPVPGGVGLMTICGLMMNT 111


>SB_49404| Best HMM Match : DUF11 (HMM E-Value=3.1e-31)
          Length = 256

 Score = 32.3 bits (70), Expect = 0.090
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 182 GSYKEKRATFSGRRGIPGGGQSSFAVTPVPGGXGPMTVAMLMRN 313
           GSY    AT SG    PGGG +S   TPVP     +++   + N
Sbjct: 88  GSYANT-ATVSGTESDPGGGNNSSTNTPVPVPQSDLSIVKTVNN 130



 Score = 30.7 bits (66), Expect = 0.28
 Identities = 16/30 (53%), Positives = 17/30 (56%)
 Frame = +2

Query: 182 GSYKEKRATFSGRRGIPGGGQSSFAVTPVP 271
           GSY    AT SG    PGGG +S   TPVP
Sbjct: 208 GSYANT-ATVSGTESDPGGGNNSSTNTPVP 236


>SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1387

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -2

Query: 260 SQRSYFDRLLVCHVAH*TLPAFLCRILNSVDTTVYNDGSRLDPRASDH 117
           ++  Y D L V  +    LP+++  I+N +    +++  +L+P  S H
Sbjct: 632 TRAKYVDNLTVLEIILRNLPSYMKYIVNDIQDFAFSNNMKLNPAKSRH 679


>SB_37200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 908

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 87  ILVVAIGRPEMVRGSWIKPGAVVIDCGI 170
           ILV A  RPE + G+ ++PG   IDC I
Sbjct: 700 ILVAATNRPEAIDGALLRPGR--IDCMI 725


>SB_19460| Best HMM Match : AAA (HMM E-Value=0)
          Length = 340

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 87  ILVVAIGRPEMVRGSWIKPGAVVIDCGI 170
           ILV A  RPE + G+ ++PG   IDC I
Sbjct: 233 ILVAATNRPEAIDGALLRPGR--IDCMI 258


>SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22)
          Length = 455

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 221 RGIPGGGQSSFAVTPVPGGXGPMTVAMLMRN 313
           RG  GG +  F V  + GG GP+     +RN
Sbjct: 91  RGPGGGARVGFDVVTLDGGRGPLARVKTLRN 121


>SB_27422| Best HMM Match : Dynamin_N (HMM E-Value=3)
          Length = 485

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -3

Query: 223 TSPTKRCPLFFVGSSIALIPQSITTAPGLIQEPRTISGRPIATTSISAVLVISLKFL 53
           T PT++ P     S +AL+P+ I    GL+++ RT    P+ +     V   S K L
Sbjct: 403 TMPTRKTPPTPALSRMALVPEEI---EGLVKDSRTRHRTPVVSYHPKIVSATSCKGL 456


>SB_3257| Best HMM Match : OCD_Mu_crystall (HMM E-Value=3.4e-08)
          Length = 157

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 81  AEILVVAIGRPEMV-RGSWIKPGAVVIDCGINAIEDPTKK 197
           A+++V A    E V  G W+K GAV     INA+  PT K
Sbjct: 88  ADVIVTATFATEPVLMGKWVKKGAV-----INAVGAPTPK 122


>SB_59115| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 1457

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -3

Query: 157 ITTAPGLIQEPRTISGRPIATTSISAVLVISLKFLVFEWHTVTVACSHFSNS 2
           +TTA  +++EP T S RP ++T +  +L       + E  +V  +   FS S
Sbjct: 418 VTTATTIVKEPPTSSERP-SSTVVERILEKRPDSFILETGSVRDSVGSFSES 468


>SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12)
          Length = 1206

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 290 SWAPXRPXQESQRSYFDRLLVCHVAH*TLPAFLCRI-LNSVDTTVY 156
           SW   +  ++S  S+ + LL  H A    P F+  + +NS +TT Y
Sbjct: 324 SWGIAKSWEDSTWSWEEALLKIHSAFKRAPLFVVEVEVNSKNTTQY 369


>SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2391

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 244 LTASWYATSPTKRCPLFFVGSSIALIPQSITTAPGLIQEP 125
           +TAS  AT P      F   +S   +P S+ +  GL+Q P
Sbjct: 861 MTASISATDPIAGLKPFSFATSCRTLPFSLNSCLGLVQPP 900


>SB_22017| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-08)
          Length = 338

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -2

Query: 131 RASDHLWTTDRHHQYFCCLSNFTQILSL 48
           RA+ HLW T   H+++  L++ + ++ L
Sbjct: 202 RANTHLWNTRLWHRFYLALASISLLIVL 229


>SB_13495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -2

Query: 224 HVAH*TLPAFLCRILNSVDTTVYNDGSRLDPRASDHLWT 108
           H A  TL   +  I NS  TTV +D + LDP   +H+ T
Sbjct: 3   HEALLTLMCEVEAIFNSPLTTVSSDPNDLDPLTPNHILT 41


>SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17)
          Length = 1426

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 64  VKLLRQQKYWWWRSVVQRWSEALGSSLE 147
           +KL +QQKY  WR  ++   +AL + L+
Sbjct: 411 IKLEKQQKYRDWRKEIEELLQALRAKLK 438


>SB_54545| Best HMM Match : TIP49 (HMM E-Value=4.3)
          Length = 516

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -2

Query: 149 GSRLDPRASDHLWTTDRHHQYFCCLSNFTQILSL*MAHCDSSVFP 15
           G+RL  +    L T +R    FCC SNF  +L +    CDSS  P
Sbjct: 99  GNRLCFQREMFLLTVERTR--FCCASNFRILLKM----CDSSKDP 137


>SB_48497| Best HMM Match : THAP (HMM E-Value=0.00088)
          Length = 866

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +3

Query: 21  HATVTVCHSKTKNLSEITKTAEILVVAIGRPEMVRGSWIKPGAVVIDCGINAIED 185
           H  V+ C S++KN +  +K      +   +  +VR SW+     ++  G N  +D
Sbjct: 3   HCAVSDCSSQSKNANGKSKKISFFSLPSEKRPVVRKSWLVRLTKLLPPGKNLSKD 57


>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
          Length = 1189

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 242 DRLLVCHVAH*TLPAF-LCRILNSVDTTV 159
           DR+ +CH  H  L AF LC +L++    V
Sbjct: 573 DRVYLCHGPHRQLEAFQLCNVLSNAPVLV 601


>SB_20652| Best HMM Match : OmpH (HMM E-Value=1.9)
          Length = 842

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 242 DRLLVCHVAH*TLPAF-LCRILNSVDTTV 159
           DR+ +CH  H  L AF LC +L++    V
Sbjct: 301 DRVYLCHGPHRQLEAFQLCNVLSNAPVLV 329


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,927,057
Number of Sequences: 59808
Number of extensions: 171300
Number of successful extensions: 505
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 425519554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)