Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20862
         (321 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41552-3|AAC69100.2|  303|Caenorhabditis elegans Dauer or aging ...    93   4e-20
AF068713-6|AAC17797.1|  282|Caenorhabditis elegans Serpentine re...    29   0.75 
Z78415-1|CAB01671.1|  280|Caenorhabditis elegans Hypothetical pr...    29   0.99 
Z78013-7|CAB01423.2|  176|Caenorhabditis elegans Hypothetical pr...    27   4.0  
Z19155-2|CAA79561.1| 1139|Caenorhabditis elegans Hypothetical pr...    27   4.0  
Z99281-19|CAD56260.1|  317|Caenorhabditis elegans Hypothetical p...    26   5.3  
Z79756-3|CAB02121.1|  527|Caenorhabditis elegans Hypothetical pr...    26   5.3  
U41105-5|AAA82398.1|  390|Caenorhabditis elegans Hypothetical pr...    26   7.0  
AF016447-1|AAG24019.1|  341|Caenorhabditis elegans Seven tm rece...    26   7.0  
AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical ...    26   7.0  
AF022984-1|AAB69953.1|  540|Caenorhabditis elegans Hypothetical ...    25   9.2  
AC006780-7|AAF60648.1|  394|Caenorhabditis elegans Hypothetical ...    25   9.2  
AC006780-6|AAF60647.1|  401|Caenorhabditis elegans Hypothetical ...    25   9.2  

>U41552-3|AAC69100.2|  303|Caenorhabditis elegans Dauer or aging
           adult overexpressionprotein 3 protein.
          Length = 303

 Score = 93.1 bits (221), Expect = 4e-20
 Identities = 44/82 (53%), Positives = 55/82 (67%)
 Frame = +3

Query: 6   LLKWEHATVTVCHSKTKNLSEITKTAEILVVAIGRPEMVRGSWIKPGAVVIDCGINAIED 185
           L  W H TVT+CHSKT NL E    A+IL+VAIGR   V+  WIKPGA VIDCGIN  +D
Sbjct: 186 LFLWHHGTVTICHSKTPNLKEKCLRADILIVAIGRKHFVKADWIKPGAFVIDCGINVGDD 245

Query: 186 PTKKSGQRLVGDVAYQEAVKVA 251
           P   + +++ GDV  + A +VA
Sbjct: 246 P---NSRKIYGDVDTEAAKEVA 264



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = +2

Query: 257 VTPVPGGXGPMTVAMLMRNT 316
           +TPVPGG GPMTVAML+RNT
Sbjct: 267 LTPVPGGVGPMTVAMLIRNT 286


>AF068713-6|AAC17797.1|  282|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 67 protein.
          Length = 282

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -2

Query: 179 NSVDTTVYNDGSRLDPRAS-DHLWTTDRHHQYFCCLSNFTQILSL*MAHC 33
           N +DT +  D +R    A   H W + R    FCC+   T +LSL +  C
Sbjct: 149 NVIDTPIDCDSARCCYNACYAHFWIS-REQVMFCCIVMMTVLLSLKLVVC 197


>Z78415-1|CAB01671.1|  280|Caenorhabditis elegans Hypothetical
           protein C17G1.1 protein.
          Length = 280

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 7   C*NGNTLLSQCAIQRLRI*VKLLRQQKYWWWRSVVQRWSEAL-GSSLEPSL*TVVSTLL 180
           C  G+ ++ +CA   + I  K  + ++ W+W SV+   SEAL  SS + SL      LL
Sbjct: 76  CWTGDVVIKECASACVSIYTKS-KTREGWFWTSVLMDCSEALIWSSPDLSLKPTTMVLL 133


>Z78013-7|CAB01423.2|  176|Caenorhabditis elegans Hypothetical
           protein F15B9.3 protein.
          Length = 176

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +3

Query: 57  NLSEITKTAEILVVAIGRPEMVRGSWIKPGAVVIDCGINAIEDPTKKSGQRLVG 218
           N  + T  A+ L+VAI +     GS+ +   + ID  I A+   TKK    ++G
Sbjct: 58  NYDKFTSIAD-LIVAIKKKSESLGSFFEKLYIEIDAEIQALTPETKKFVTEMLG 110


>Z19155-2|CAA79561.1| 1139|Caenorhabditis elegans Hypothetical
           protein F54G8.3 protein.
          Length = 1139

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 128 ASDHLWTTDRHHQYFCCLSNFTQILS 51
           A  +L TTDRH++Y  C+  F+  ++
Sbjct: 176 AQKNLPTTDRHNEYGGCMEGFSAAIT 201


>Z99281-19|CAD56260.1|  317|Caenorhabditis elegans Hypothetical
           protein Y57G11C.38 protein.
          Length = 317

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 223 TSPTKRCPLFFVGSSIALIPQSITTAPGLIQEPRTISGRPIAT 95
           T+P    P     ++IAL  ++  T   +I EP+   G P+ T
Sbjct: 215 TTPVMNDPTLLTLATIALGDETAVTPAIIIPEPQPTVGTPVTT 257


>Z79756-3|CAB02121.1|  527|Caenorhabditis elegans Hypothetical
           protein F53C11.4 protein.
          Length = 527

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 24  ATVTVCHSKTKNLSEITKTAEILVVAIGRPEMVRGSWIKPGAVVIDCGINA 176
           + V   + +TK+ + +    E L   IG P++  G W+ P  V    G+NA
Sbjct: 9   SVVCQLYHRTKHNNSVNVVCE-LSEKIGSPQLENGEWVVPNDVT---GLNA 55


>U41105-5|AAA82398.1|  390|Caenorhabditis elegans Hypothetical
           protein T02G5.7 protein.
          Length = 390

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 135 IKPGAVVIDCGINAIEDPTKKSGQRLVGDVAYQEA 239
           I+P  V +  G  AI  P   SG R+V  +AY  A
Sbjct: 332 IEPSVVNVKGGAVAIGHPLGMSGLRIVNSLAYSLA 366


>AF016447-1|AAG24019.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 31 protein.
          Length = 341

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -3

Query: 106 PIATTSISAVLVISLKFLVFEWH--TVTVACS 17
           P  T  I AVL++++ FL  EW   T  + CS
Sbjct: 257 PTLTFYIPAVLILTVPFLNLEWSFPTGVIVCS 288


>AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical
           protein C48E7.8 protein.
          Length = 820

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 253 EATLTASWYATSPTKRCPLFFVG 185
           +A L+     TSP  RCP FF+G
Sbjct: 551 KAELSFKLLYTSPLSRCPPFFLG 573


>AF022984-1|AAB69953.1|  540|Caenorhabditis elegans Hypothetical
           protein ZK488.6 protein.
          Length = 540

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 15  WEHATVTVCHSKTKNLSEITKTAEI 89
           W H  +  CH ++K+ S+ T   +I
Sbjct: 326 WHHGQINDCHHRSKHFSKWTALIDI 350


>AC006780-7|AAF60648.1|  394|Caenorhabditis elegans Hypothetical
           protein Y47D9A.1b protein.
          Length = 394

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 97  WRSVVQRWSEALGSSLEPS 153
           WRSVV  W+   G  LEP+
Sbjct: 316 WRSVVGMWARIEGIPLEPN 334


>AC006780-6|AAF60647.1|  401|Caenorhabditis elegans Hypothetical
           protein Y47D9A.1a protein.
          Length = 401

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 97  WRSVVQRWSEALGSSLEPS 153
           WRSVV  W+   G  LEP+
Sbjct: 323 WRSVVGMWARIEGIPLEPN 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,158,692
Number of Sequences: 27780
Number of extensions: 125383
Number of successful extensions: 409
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)