Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20862
         (321 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   1.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   3.7  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    20   6.4  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    20   8.4  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    20   8.4  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 70  LLRQQKYWWWRSVVQRWSEALGSS 141
           L RQ    ++R ++Q W  ALG++
Sbjct: 338 LTRQNPAAFFRGMMQAWMTALGTA 361


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 130 EPRTISGRPIATTSISAVLVISLKFLVFEW 41
           +P+ ISG P+A  S++ V   +  F+  +W
Sbjct: 581 QPQVISGNPVA--SVNMVGERAADFIKEDW 608


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 83  CCLSNFTQILSL*MAHCDSSV 21
           C L+  T  L   +A C+S++
Sbjct: 166 CALTTLTDCLRSELAQCESNI 186


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -3

Query: 169 IPQSITTAPGLIQEPRTISGRPIATTSISAVLVISLKFLVFEWHTV 32
           I Q +TT  G++  P     R +   S  A   I  K  +  W T+
Sbjct: 218 IAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATI 263


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -3

Query: 169 IPQSITTAPGLIQEPRTISGRPIATTSISAVLVISLKFLVFEWHTV 32
           I Q +TT  G++  P     R +   S  A   I  K  +  W T+
Sbjct: 218 IAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATI 263


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,562
Number of Sequences: 438
Number of extensions: 1807
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)