Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20862
(321 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g00620.1 68417.m00086 tetrahydrofolate dehydrogenase/cyclohyd... 115 6e-27
At4g00600.1 68417.m00084 tetrahydrofolate dehydrogenase/cyclohyd... 110 2e-25
At3g12290.1 68416.m01534 tetrahydrofolate dehydrogenase/cyclohyd... 97 3e-21
At2g38660.1 68415.m04748 tetrahydrofolate dehydrogenase/cyclohyd... 92 7e-20
At4g27350.1 68417.m03925 expressed protein 27 2.1
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 27 2.8
At2g28990.1 68415.m03526 leucine-rich repeat protein kinase, put... 26 6.5
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 25 8.6
At1g80860.2 68414.m09486 expressed protein 25 8.6
At1g80860.1 68414.m09487 expressed protein 25 8.6
>At4g00620.1 68417.m00086 tetrahydrofolate
dehydrogenase/cyclohydrolase, putative similar to
SP|P07245 C-1-tetrahydrofolate synthase, cytoplasmic
(C1-THF synthase) [Includes: Methylenetetrahydrofolate
dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate
cyclohydrolase (EC 3.5.4.9); Formyltetrahydrofolate
synthetase (EC 6.3.4.3)] {Saccharomyces cerevisiae};
contains Pfam profiles PF02882: Tetrahydrofolate
dehydrogenase/cyclohydrolase, NAD(P)-binding domain,
PF00763: Tetrahydrofolate dehydrogenase/cyclohydrolase,
catalytic domain
Length = 360
Score = 115 bits (277), Expect = 6e-27
Identities = 52/83 (62%), Positives = 67/83 (80%)
Frame = +3
Query: 6 LLKWEHATVTVCHSKTKNLSEITKTAEILVVAIGRPEMVRGSWIKPGAVVIDCGINAIED 185
LL+ E ATV++ HS+TKN EIT+ A+I++ A+G+P MVRGSWIKPGAV+ID GIN +ED
Sbjct: 246 LLQREDATVSIIHSRTKNPEEITREADIIISAVGQPNMVRGSWIKPGAVLIDVGINPVED 305
Query: 186 PTKKSGQRLVGDVAYQEAVKVAS 254
P+ G RLVGD+ Y+EA KVAS
Sbjct: 306 PSAARGYRLVGDICYEEASKVAS 328
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +2
Query: 254 AVTPVPGGXGPMTVAMLMRNT 316
A+TPVPGG GPMT+AML+ NT
Sbjct: 329 AITPVPGGVGPMTIAMLLSNT 349
>At4g00600.1 68417.m00084 tetrahydrofolate
dehydrogenase/cyclohydrolase, putative similar to
SP|P09440 C-1-tetrahydrofolate synthase, mitochondrial
precursor (C1-THF synthase) [Includes:
Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5);
Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9);
Formyltetrahydrofolate synthetase (EC 6.3.4.3)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF02882: Tetrahydrofolate dehydrogenase/cyclohydrolase,
NAD(P)-binding domain, PF00763: Tetrahydrofolate
dehydrogenase/cyclohydrolase, catalytic domain
Length = 310
Score = 110 bits (265), Expect = 2e-25
Identities = 49/83 (59%), Positives = 65/83 (78%)
Frame = +3
Query: 6 LLKWEHATVTVCHSKTKNLSEITKTAEILVVAIGRPEMVRGSWIKPGAVVIDCGINAIED 185
LL+ E ATV++ HS+T N E+T+ A+IL+ A+G+P MVRGSWIKPGAV+ID GI +ED
Sbjct: 196 LLQKEDATVSIIHSRTMNPEELTRQADILISAVGKPNMVRGSWIKPGAVLIDVGIKPVED 255
Query: 186 PTKKSGQRLVGDVAYQEAVKVAS 254
P+ G+RLVGD+ Y EA K+AS
Sbjct: 256 PSAAGGERLVGDICYVEASKIAS 278
Score = 38.3 bits (85), Expect = 0.001
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +2
Query: 254 AVTPVPGGXGPMTVAMLMRNT 316
A+TPVPG GPMT+AML+ NT
Sbjct: 279 AITPVPGDVGPMTIAMLLSNT 299
>At3g12290.1 68416.m01534 tetrahydrofolate
dehydrogenase/cyclohydrolase, putative similar to
SP|P07245 C-1-tetrahydrofolate synthase, cytoplasmic
(C1-THF synthase) [Includes: Methylenetetrahydrofolate
dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate
cyclohydrolase (EC 3.5.4.9); Formyltetrahydrofolate
synthetase (EC 6.3.4.3)] {Saccharomyces cerevisiae};
contains Pfam profiles PF02882: Tetrahydrofolate
dehydrogenase/cyclohydrolase, NAD(P)-binding domain,
PF00763: Tetrahydrofolate dehydrogenase/cyclohydrolase,
catalytic domain
Length = 299
Score = 96.7 bits (230), Expect = 3e-21
Identities = 47/82 (57%), Positives = 60/82 (73%)
Frame = +3
Query: 6 LLKWEHATVTVCHSKTKNLSEITKTAEILVVAIGRPEMVRGSWIKPGAVVIDCGINAIED 185
LLK + ATVT HS TK+ I + A+I++ A G+ M++G+WIKPGA VID G NA+ D
Sbjct: 187 LLKAD-ATVTTVHSHTKDPEAIIREADIVIAACGQAHMIKGNWIKPGAAVIDVGTNAVSD 245
Query: 186 PTKKSGQRLVGDVAYQEAVKVA 251
P+KKSG RLVGDV + EA KVA
Sbjct: 246 PSKKSGYRLVGDVDFAEASKVA 267
Score = 42.3 bits (95), Expect = 7e-05
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = +2
Query: 257 VTPVPGGXGPMTVAMLMRNT 316
+TPVPGG GPMTVAML+RNT
Sbjct: 270 ITPVPGGVGPMTVAMLLRNT 289
>At2g38660.1 68415.m04748 tetrahydrofolate
dehydrogenase/cyclohydrolase, putative similar to
SP|P09440 C-1-tetrahydrofolate synthase, mitochondrial
precursor (C1-THF synthase) [Includes:
Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5);
Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9);
Formyltetrahydrofolate synthetase (EC 6.3.4.3)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF02882: Tetrahydrofolate dehydrogenase/cyclohydrolase,
NAD(P)-binding domain, PF00763: Tetrahydrofolate
dehydrogenase/cyclohydrolase, catalytic domain
Length = 352
Score = 92.3 bits (219), Expect = 7e-20
Identities = 44/83 (53%), Positives = 59/83 (71%)
Frame = +3
Query: 6 LLKWEHATVTVCHSKTKNLSEITKTAEILVVAIGRPEMVRGSWIKPGAVVIDCGINAIED 185
LL+ ATV+ H+ TK+ IT+ A+I++ A G P +VRGSW+KPGAVVID G +ED
Sbjct: 240 LLQRHDATVSTVHAFTKDPEHITRKADIVIAAAGIPNLVRGSWLKPGAVVIDVGTTPVED 299
Query: 186 PTKKSGQRLVGDVAYQEAVKVAS 254
+ + G RLVGDV Y+EA+ VAS
Sbjct: 300 SSCEFGYRLVGDVCYEEALGVAS 322
Score = 38.7 bits (86), Expect = 9e-04
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +2
Query: 254 AVTPVPGGXGPMTVAMLMRNT 316
A+TPVPGG GPMT+ ML+ NT
Sbjct: 323 AITPVPGGVGPMTITMLLCNT 343
>At4g27350.1 68417.m03925 expressed protein
Length = 278
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +2
Query: 212 SGRRGIPGGGQSSFAVTPVPGGXGPMTVAMLMRNTC 319
S + I GG S+ +P G GP+ V + C
Sbjct: 14 SSTKPISGGNNSAAVAAEIPAGDGPVLVQLFSSQGC 49
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +2
Query: 176 Y*GSYKEKRATFSGRRGIPGGGQSSFAVTPVPGGXG 283
Y GSY E + G G GGG S + GG G
Sbjct: 327 YGGSYGEPGGGYGGPSGSYGGGYGSSGIGGYGGGMG 362
>At2g28990.1 68415.m03526 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 884
Score = 25.8 bits (54), Expect = 6.5
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 87 ILVVAIGRPEMVRGSWIKPGAVVIDCGINAIEDPTKKS--GQRLVGDVAYQEAVKVASL 257
+L+ IG ++ G+ + G + +DCG+ + E P S G D + + K+ S+
Sbjct: 5 LLLAMIGTFVVIIGAQDQEGFISLDCGLPSDESPYDDSFNGLTFTSDSTFIQTGKIDSV 63
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 230 PGGGQSSFAVTPVPGGXGP 286
PGG S TP PGG P
Sbjct: 477 PGGSPPSSPTTPTPGGSPP 495
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 230 PGGGQSSFAVTPVPGGXGP 286
PGG S TP PGG P
Sbjct: 490 PGGSPPSSPTTPTPGGSPP 508
>At1g80860.2 68414.m09486 expressed protein
Length = 164
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 88 YWWWRSVVQRWSEALGSSLEPSL*TVVSTLLRILQ 192
YWW + Q W G +PS TV++ + +L+
Sbjct: 16 YWWLWTNAQSWVNLCGRERDPS--TVMARVSHVLK 48
>At1g80860.1 68414.m09487 expressed protein
Length = 164
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 88 YWWWRSVVQRWSEALGSSLEPSL*TVVSTLLRILQ 192
YWW + Q W G +PS TV++ + +L+
Sbjct: 16 YWWLWTNAQSWVNLCGRERDPS--TVMARVSHVLK 48
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,796,412
Number of Sequences: 28952
Number of extensions: 118946
Number of successful extensions: 455
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 350523880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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