Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20860
         (343 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P31420 Cluster: Ommochrome-binding protein precursor; n...    87   1e-16
UniRef50_Q9NDA4 Cluster: Diapause-associated protein; n=7; Ostri...    45   3e-04
UniRef50_Q9VMN0 Cluster: CG14006-PA; n=1; Drosophila melanogaste...    35   0.31 
UniRef50_A0Y0F3 Cluster: Putative enzyme with a phosphatase-like...    34   0.72 
UniRef50_Q16Y63 Cluster: Putative uncharacterized protein; n=1; ...    33   1.2  
UniRef50_UPI0000498D79 Cluster: protein phosphatase; n=2; Entamo...    32   2.2  
UniRef50_Q54UC1 Cluster: Heat shock factor (HSF)-type DNA-bindin...    31   5.0  
UniRef50_A0D965 Cluster: Chromosome undetermined scaffold_41, wh...    31   5.0  
UniRef50_A0BSY9 Cluster: Chromosome undetermined scaffold_126, w...    31   5.0  
UniRef50_A6VF62 Cluster: Restriction modification system DNA spe...    31   5.0  
UniRef50_Q9DVS9 Cluster: PxORF104 peptide; n=1; Plutella xyloste...    30   8.8  
UniRef50_Q4H387 Cluster: Low density lipoprotein receptor-relate...    30   8.8  

>UniRef50_P31420 Cluster: Ommochrome-binding protein precursor; n=1;
           Manduca sexta|Rep: Ommochrome-binding protein precursor
           - Manduca sexta (Tobacco hawkmoth) (Tobacco hornworm)
          Length = 274

 Score = 86.6 bits (205), Expect = 1e-16
 Identities = 45/83 (54%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
 Frame = +1

Query: 7   MNLIIXITIIALVHG-NQELEVLKDNVHNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAY 183
           +N ++ +    +V+G N   EVLKDN+H A QL  D Q NTLFFS+S   + KTVLK  Y
Sbjct: 13  VNQMMALKDCVVVNGKNYGKEVLKDNIHQAYQLSFDPQQNTLFFSYSDEVDSKTVLKMGY 72

Query: 184 LNLNTKEFGEISGINXGVATAYD 252
           LNL TK FGEISG+  G+ATA D
Sbjct: 73  LNLATKSFGEISGVKDGMATAVD 95



 Score = 37.1 bits (82), Expect = 0.077
 Identities = 13/27 (48%), Positives = 22/27 (81%)
 Frame = +3

Query: 261 NVXYLGGQDGIFKFNHAAKXAKNLRIT 341
           ++ YLGG+DGI+ +++A K AKN+ +T
Sbjct: 99  HIVYLGGKDGIYTYDYATKSAKNIGVT 125


>UniRef50_Q9NDA4 Cluster: Diapause-associated protein; n=7;
           Ostrinia|Rep: Diapause-associated protein - Ostrinia
           furnacalis (Asian corn borer)
          Length = 291

 Score = 45.2 bits (102), Expect = 3e-04
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
 Frame = +1

Query: 67  VLKDNVHNASQLVVDYQTNTLFFSHS----SLFEGK-TVLKSAYLNLNTKEFGEISGINX 231
           VL  +V    QL +D  TNTLFFS++       EG     +SAY+NL     G I G++ 
Sbjct: 37  VLMKDVEKPYQLGLDRDTNTLFFSYTVDEQRRREGDDNAFRSAYVNLKDGTSGTIPGVHN 96

Query: 232 GVATAYDREKTL 267
           G A AYD ++ +
Sbjct: 97  GFANAYDTQQKI 108



 Score = 33.1 bits (72), Expect = 1.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 255 RKNVXYLGGQDGIFKFNHAAKXAKNLRIT 341
           ++ + Y+GG  G+ KF++  K A NL IT
Sbjct: 105 QQKIVYIGGDTGVHKFDYRTKTASNLNIT 133


>UniRef50_Q9VMN0 Cluster: CG14006-PA; n=1; Drosophila
           melanogaster|Rep: CG14006-PA - Drosophila melanogaster
           (Fruit fly)
          Length = 429

 Score = 35.1 bits (77), Expect = 0.31
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +3

Query: 9   ESDNXDNYNCFSSREPRIGSXKR*CAQCIPTRSRLPNQH--TVFQSLFFVRRENSS 170
           E ++ DN   + SR P   +    C QC PTRS  P  H  +++++L +   ++SS
Sbjct: 370 EQEDQDNALIYESRRPTERNCFNRCHQCTPTRSPRPEPHLTSLYRNLHYSNAKSSS 425


>UniRef50_A0Y0F3 Cluster: Putative enzyme with a phosphatase-like
           domain; n=2; Alteromonadales|Rep: Putative enzyme with a
           phosphatase-like domain - Alteromonadales bacterium TW-7
          Length = 236

 Score = 33.9 bits (74), Expect = 0.72
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
 Frame = +1

Query: 10  NLIIXITIIALVHGNQELEVLKDNVHNASQLVVDYQTNTLFFSHSSLFEGKT----VLKS 177
           NL    T+IA+ +GN E+E  + N+HN  +LV+    +     HS+LF+       V KS
Sbjct: 124 NLAQHFTLIAITNGNVEIE--RFNLHNKFELVLQAGMHGKAKPHSTLFDKAAAHLKVTKS 181

Query: 178 AYLNLNTKEFGEISGIN 228
             L++      ++ G N
Sbjct: 182 DILHIGDSLDTDVQGAN 198


>UniRef50_Q16Y63 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 721

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +1

Query: 40  LVHGNQELEVLKDNV--HNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAYLNLNTKEFGE 213
           L   N ELE L+  +  HN   +V+  Q+N L +    LF+G  V++  +L  N+    E
Sbjct: 202 LYAANNELETLQSALFQHNPLLMVLFLQSNKLVYLDKDLFDGIEVMEYLWLRNNSLTSFE 261

Query: 214 ISGI 225
            +G+
Sbjct: 262 FNGL 265


>UniRef50_UPI0000498D79 Cluster: protein phosphatase; n=2; Entamoeba
           histolytica HM-1:IMSS|Rep: protein phosphatase -
           Entamoeba histolytica HM-1:IMSS
          Length = 500

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 18/67 (26%), Positives = 34/67 (50%)
 Frame = +1

Query: 40  LVHGNQELEVLKDNVHNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAYLNLNTKEFGEIS 219
           L+ GN E  ++ +N+  AS+    YQ+N L     +LF+   +     + + TKE G+  
Sbjct: 151 LLRGNHESRIMSENMTFASEFTRKYQSNELLELVYTLFDSFPIA----VRVGTKELGDFL 206

Query: 220 GINXGVA 240
             + G++
Sbjct: 207 CCHGGIS 213


>UniRef50_Q54UC1 Cluster: Heat shock factor (HSF)-type DNA-binding
           domain-containing protein; n=1; Dictyostelium discoideum
           AX4|Rep: Heat shock factor (HSF)-type DNA-binding
           domain-containing protein - Dictyostelium discoideum AX4
          Length = 751

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 17/49 (34%), Positives = 30/49 (61%)
 Frame = +1

Query: 46  HGNQELEVLKDNVHNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAYLNL 192
           + + +  +L+  ++  ++  VDY  N L FSHSSL E  + L++AY +L
Sbjct: 199 YNSADKAILQQLLYQFTKFQVDY--NELKFSHSSLQESHSQLQNAYQSL 245


>UniRef50_A0D965 Cluster: Chromosome undetermined scaffold_41, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_41,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 733

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +1

Query: 82  VHNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAYLN--LNTKEFGEISGINXGVATAYDR 255
           ++N  +++V  Q   L FS      GK+ +++ Y +  LN   FG I  +N G    +  
Sbjct: 249 IYNVGKIIVLLQFCFLIFSCIFYVIGKSSVEAGYNSWLLNDGNFGVIGELNPGFQFFFSY 308

Query: 256 EKTLXTLVDRMGY 294
              L T+   MGY
Sbjct: 309 YFGLGTMTTTMGY 321


>UniRef50_A0BSY9 Cluster: Chromosome undetermined scaffold_126,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_126,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 312

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = +1

Query: 97  QLVVDYQTNTLFFSHSSLFEGKTVLKSAYLNLNTKEFGEISGINXGVATAYDREKT 264
           Q    + T      HS+ F+ K + K  Y N N + FG  S     V T   RE +
Sbjct: 21  QTAQSFNTQLNSLGHSTTFQQKEIKKVPYKNPNIQAFGSKSDAQKQVLTQQQRENS 76


>UniRef50_A6VF62 Cluster: Restriction modification system DNA
           specificity domain; n=1; Methanococcus maripaludis
           C7|Rep: Restriction modification system DNA specificity
           domain - Methanococcus maripaludis C7
          Length = 432

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +1

Query: 31  IIALVHGNQELEVLKDNVHNASQLVVDYQT 120
           IIAL +G+  LE+ K N  N   +V DYQT
Sbjct: 359 IIALANGSTFLEISKTNFKNIRVIVPDYQT 388


>UniRef50_Q9DVS9 Cluster: PxORF104 peptide; n=1; Plutella xylostella
           granulovirus|Rep: PxORF104 peptide - Plutella xylostella
           granulovirus
          Length = 396

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +1

Query: 67  VLKDNVHNASQLVVDYQTNTLF---FSHSSLFEGKTVLKSAYLNLNTKEFGEISGIN 228
           V++D      ++VV Y+   ++      +S+F G     SAY +LNTK +    G+N
Sbjct: 213 VIEDTPDYQKKIVVAYEFKNVYDIKVGDNSIFIGSDAKLSAYSDLNTKFYKHTVGVN 269


>UniRef50_Q4H387 Cluster: Low density lipoprotein receptor-related
           protein; n=1; Ciona intestinalis|Rep: Low density
           lipoprotein receptor-related protein - Ciona
           intestinalis (Transparent sea squirt)
          Length = 898

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 49  GNQELEVLKDNVHNASQLVVDYQTNTLFFS 138
           G+  +E+   N+HN S +VVD Q+  L++S
Sbjct: 200 GSDCIELFSHNLHNVSAMVVDSQSKRLYWS 229


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 283,972,600
Number of Sequences: 1657284
Number of extensions: 4512618
Number of successful extensions: 11221
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11218
length of database: 575,637,011
effective HSP length: 89
effective length of database: 428,138,735
effective search space used: 10275329640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)