Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20860
         (343 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   2.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   2.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   2.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   2.0  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   4.6  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    20   8.1  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = -2

Query: 228 IDAGYFSELF---SVKVQVSGFKNCFP 157
           I A YF+ +F   + K+ + GF   FP
Sbjct: 385 IFASYFAYIFGKFACKIMIQGFSYAFP 411


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = -2

Query: 228 IDAGYFSELF---SVKVQVSGFKNCFP 157
           I A YF+ +F   + K+ + GF   FP
Sbjct: 385 IFASYFAYIFGKFACKIMIQGFSYAFP 411


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = -2

Query: 228 IDAGYFSELF---SVKVQVSGFKNCFP 157
           I A YF+ +F   + K+ + GF   FP
Sbjct: 385 IFASYFAYIFGKFACKIMIQGFSYAFP 411


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = -2

Query: 228 IDAGYFSELF---SVKVQVSGFKNCFP 157
           I A YF+ +F   + K+ + GF   FP
Sbjct: 385 IFASYFAYIFGKFACKIMIQGFSYAFP 411


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +1

Query: 1   PTMNLIIXITIIALVH--GNQELEVLKDNVHNASQLVVDYQTNTLF 132
           PT      I + A +H  G   L  L  +VH+ S +  DY  + L+
Sbjct: 377 PTAESKADIKMYADMHQYGYNTLSPLPSSVHSHSTIGNDYYNSPLY 422


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 4/12 (33%), Positives = 12/12 (100%)
 Frame = -3

Query: 227 LMPDISPNSLVL 192
           ++P+++PN+++L
Sbjct: 155 IVPEVAPNNIIL 166


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,437
Number of Sequences: 336
Number of extensions: 1241
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6664455
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)