Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20860
         (343 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe...    27   1.1  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    25   3.2  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    24   5.6  
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy...    24   5.6  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    24   5.6  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    24   7.5  
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...    23   9.8  
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...    23   9.8  
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...    23   9.8  

>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +1

Query: 7   MNLIIXITIIALVHGNQELEVLKDNVHNASQLVVDYQTNTLFFSHSSLF 153
           + L+  ++IIA +HGN+E+ V   ++   + L +D + +      SS F
Sbjct: 408 IQLLTPVSIIASLHGNKEIGV--QDIEECNDLFLDARRSAQVVKSSSGF 454


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 34  IALVHGNQELEVLKDNVHNASQLVVDYQTNTL 129
           IAL  G    +V   N  NA QL++D Q   L
Sbjct: 307 IALEEGFSVYQVFCTNFPNAQQLIIDNQNQLL 338


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 290 PILSTKVXNVFSLSYAVATPXLMPDISPNSLVLRF 186
           P+L   + N  SL   VA+P L  +  P+ + L +
Sbjct: 98  PVLGESIVNPISLPVDVASPFLPSECYPSKVELPY 132


>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 427

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 46  HGNQELEVLKDN--VHNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAYLNLNTKEF 207
           +G + ++   D   +   +++  +Y    LFF+ S   + +T  +S  +N   KEF
Sbjct: 117 YGTEHIDFFTDGGYMEALTRIKRNYGVALLFFTSSKNDDSETFSRSVLMNQELKEF 172


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 166 VLKSAYLNLNTKEFGEISGINXGV 237
           +LKSA + L  KEF ++   N GV
Sbjct: 61  ILKSAKVPLKNKEFSDLVDQNIGV 84


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +1

Query: 43  VHGNQELEVLKDNVHNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAYLNLNTK 201
           V G Q +E+L D   + ++L  D      FF   S  E   +    YL+  TK
Sbjct: 344 VGGAQYIEILDDRKLDIARLYSDEFGTIKFFVKPSQNEESGMDSDTYLSFGTK 396


>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 245 HMIEKKRXVPWWTGW 289
           +MIE    +PW+ GW
Sbjct: 198 NMIEPTTNMPWYQGW 212


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 245 HMIEKKRXVPWWTGW 289
           +MIE    +PW+ GW
Sbjct: 198 NMIEPTTNMPWYQGW 212


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 245 HMIEKKRXVPWWTGW 289
           +MIE    +PW+ GW
Sbjct: 198 NMIEPTTNMPWYQGW 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,238,484
Number of Sequences: 5004
Number of extensions: 21118
Number of successful extensions: 57
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)