Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20860
         (343 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0679 - 19398696-19399303,19400425-19400596                       29   1.3  
05_04_0376 - 20754386-20755392,20755683-20756320,20756433-207566...    27   3.9  
12_02_1277 + 27497773-27500241                                         27   5.1  
06_01_1040 + 8163654-8163704,8163814-8163935,8164011-8164092,816...    27   5.1  

>09_04_0679 - 19398696-19399303,19400425-19400596
          Length = 259

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +1

Query: 34  IALVHGNQELEVLKDNVHNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAYLNLNTKEFGE 213
           +ALV    E   L +N+     +  D  +N  F  HS   +G  VL      +N+    E
Sbjct: 17  MALVLSGTEARFLSNNITVVGSVYCDACSNNTFSKHSFFLKGARVLIQCSFKVNSTMAEE 76

Query: 214 IS 219
           +S
Sbjct: 77  LS 78


>05_04_0376 -
           20754386-20755392,20755683-20756320,20756433-20756627,
           20757730-20757795,20757942-20758007,20758402-20758445
          Length = 671

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 106 VDYQTNTLFFSHSSLFEGKTVLKSAYLNLNTKEFGEISGINXGVATAYDR 255
           VD Q   ++ +  +L +G   LK   LN N+ E+G  + +  G A +  R
Sbjct: 145 VDVQWEDVYKALENLNDGSQKLKVGLLNFNSTEYGSWAQLLPGSAVSIVR 194


>12_02_1277 + 27497773-27500241
          Length = 822

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 130 TVCWFGSRLRVGMHCAHYLLXL 65
           T+CWF S LR+ ++ A +L+ L
Sbjct: 256 TLCWFTSALRLDVNMAAFLVGL 277


>06_01_1040 +
           8163654-8163704,8163814-8163935,8164011-8164092,
           8164166-8164213,8164516-8164671,8164747-8164843,
           8164942-8164984,8165375-8165442,8165533-8165617,
           8165698-8165746,8165968-8166040,8166119-8166179,
           8167114-8167180,8167400-8167453,8167537-8167665,
           8168192-8168255,8168366-8168439,8168523-8168576,
           8168696-8168764,8169394-8169483,8169656-8169763,
           8169876-8169923
          Length = 563

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -2

Query: 294 ISHPVHQGTQRFFSIICSSYAXIDAGYFSELFSVKVQVSGF 172
           ISH   QG +   S++  S +  + G    ++  ++ V GF
Sbjct: 456 ISHKTFQGNRPSLSLLLPSLSAYEIGQLLSIYEHRIAVQGF 496


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,466,275
Number of Sequences: 37544
Number of extensions: 117667
Number of successful extensions: 218
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)