Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20860
         (343 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56551| Best HMM Match : Fe_hyd_lg_C (HMM E-Value=0.0049)            28   1.7  
SB_10001| Best HMM Match : Astacin (HMM E-Value=0)                     27   4.0  
SB_41424| Best HMM Match : TBCC (HMM E-Value=0.57)                     26   7.0  
SB_13495| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  

>SB_56551| Best HMM Match : Fe_hyd_lg_C (HMM E-Value=0.0049)
          Length = 113

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = -2

Query: 279 HQGTQRFFSIICS---SYAXIDAGYFSELFSVKVQVSGFKNCFPFEQRRVT 136
           H     FF+  C    ++   D G+F+ELF  KV V  +K     + R VT
Sbjct: 18  HISIFNFFTFSCKQAVTFLNPDVGHFNELFDEKVDVLTYKTLRNKDFREVT 68


>SB_10001| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 397

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +1

Query: 43  VHGNQELEVL--KDNVHNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAYLNLNTKEFGEI 216
           VHGN E+EV+   +N   A+  ++        F  S+L+EG  +L      ++ ++ G++
Sbjct: 97  VHGNHEIEVVIKPENETTATDEIIHVNQVEDAFG-SNLYEGDIMLSGE--QVDWRDAGDV 153

Query: 217 SGINXGVATAYDR 255
            G N    TA  R
Sbjct: 154 DGGNDVNMTASKR 166


>SB_41424| Best HMM Match : TBCC (HMM E-Value=0.57)
          Length = 285

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +1

Query: 82  VHNASQLVVDYQTNTLFFSHSSLFEGKTVLKS---AYLNLN 195
           V   S  VVD+        H SL  GKT+ +S    YLN++
Sbjct: 94  VEPGSTCVVDFSAKLQLLDHPSLTHGKTLWQSIGVEYLNMS 134


>SB_13495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 160 SLRTKKSD*KTVCWFGSRLRVGMHC 86
           +++TKK+  KTVC  G+  RV  +C
Sbjct: 137 TVKTKKTAQKTVCQVGTTARVRNYC 161


>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 40   LVHG-NQELEVLKDNVHNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAYLNLNTKE 204
            +VH   + ++  KDN+   +QL+  +       S + LFE K   K   LNL  +E
Sbjct: 1378 MVHDLEKRVQAAKDNIEAMNQLMTKW-------SEAPLFERKEAKKEGLLNLEERE 1426


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,902,544
Number of Sequences: 59808
Number of extensions: 145468
Number of successful extensions: 298
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)