Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20860
         (343 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related prec...    28   6.6  
DQ314873-1|ABC40732.1| 4544|Homo sapiens low density lipoprotein...    28   6.6  
AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-re...    28   6.6  
D17716-1|BAA04570.1|  741|Homo sapiens N-acetylglucosaminyltrans...    28   8.7  
AF113921-1|AAD22449.1|  741|Homo sapiens alpha-1,3(6)-mannosylgl...    28   8.7  
AC016906-1|AAY14791.1|  415|Homo sapiens unknown protein.              28   8.7  

>X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related
           precursor (AA -19 to 4525) protein.
          Length = 4544

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +1

Query: 43  VHGNQELEVLKDNVHNASQLVVDYQTNTLFFS 138
           + G +   +LKD +HN   + VD+  + L+++
Sbjct: 588 IDGTERETILKDGIHNVEGVAVDWMGDNLYWT 619


>DQ314873-1|ABC40732.1| 4544|Homo sapiens low density
           lipoprotein-related protein 1 (alpha-2-macroglobulin
           receptor) protein.
          Length = 4544

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +1

Query: 43  VHGNQELEVLKDNVHNASQLVVDYQTNTLFFS 138
           + G +   +LKD +HN   + VD+  + L+++
Sbjct: 588 IDGTERETILKDGIHNVEGVAVDWMGDNLYWT 619


>AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein
           receptor-related protein protein.
          Length = 4544

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +1

Query: 43  VHGNQELEVLKDNVHNASQLVVDYQTNTLFFS 138
           + G +   +LKD +HN   + VD+  + L+++
Sbjct: 588 IDGTERETILKDGIHNVEGVAVDWMGDNLYWT 619


>D17716-1|BAA04570.1|  741|Homo sapiens
           N-acetylglucosaminyltransferase V protein.
          Length = 741

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 136 SHSSLFEGKTVLKSAYLNLNTKEFGEI-SGINXGVATAYDREKTLXTLVDRM 288
           S S L E    L   Y+    +E   +  G   GV TAYD +KTL  L+D +
Sbjct: 42  SSSMLREQILDLSKRYIKALAEENRNVVDGPYAGVMTAYDLKKTLAVLLDNI 93


>AF113921-1|AAD22449.1|  741|Homo sapiens
           alpha-1,3(6)-mannosylglycoprotein
           beta-1,6-N-acetyl-glucosaminyltransferase protein.
          Length = 741

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 136 SHSSLFEGKTVLKSAYLNLNTKEFGEI-SGINXGVATAYDREKTLXTLVDRM 288
           S S L E    L   Y+    +E   +  G   GV TAYD +KTL  L+D +
Sbjct: 42  SSSMLREQILDLSKRYIKALAEENRNVVDGPYAGVMTAYDLKKTLAVLLDNI 93


>AC016906-1|AAY14791.1|  415|Homo sapiens unknown protein.
          Length = 415

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 136 SHSSLFEGKTVLKSAYLNLNTKEFGEI-SGINXGVATAYDREKTLXTLVDRM 288
           S S L E    L   Y+    +E   +  G   GV TAYD +KTL  L+D +
Sbjct: 42  SSSMLREQILDLSKRYIKALAEENRNVVDGPYAGVMTAYDLKKTLAVLLDNI 93


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,167,392
Number of Sequences: 237096
Number of extensions: 679379
Number of successful extensions: 1391
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1391
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1910415606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)