Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20860
(343 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022979-9|AAB69904.1| 466|Caenorhabditis elegans Hypothetical ... 27 2.7
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr... 27 3.5
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 27 3.5
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 27 3.5
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 27 3.5
Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p... 27 3.5
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p... 27 3.5
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p... 27 3.5
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 27 3.5
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 27 3.5
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 27 3.5
Z66511-7|CAD57693.1| 567|Caenorhabditis elegans Hypothetical pr... 27 3.5
Z47067-2|CAA87329.1| 498|Caenorhabditis elegans Hypothetical pr... 27 4.7
AF100672-1|AAC68997.2| 334|Caenorhabditis elegans Hypothetical ... 27 4.7
U62639-1|AAD09364.1| 925|Caenorhabditis elegans lr protein. 26 8.1
U62281-1|AAD09363.1| 925|Caenorhabditis elegans lipoprotein rec... 26 8.1
AF185706-1|AAD56241.1| 925|Caenorhabditis elegans yolk receptor... 26 8.1
AF036703-1|AAB88554.3| 925|Caenorhabditis elegans Receptor medi... 26 8.1
AC091125-6|AAK27886.3| 474|Caenorhabditis elegans Hypothetical ... 26 8.1
>AF022979-9|AAB69904.1| 466|Caenorhabditis elegans Hypothetical
protein T02B11.6 protein.
Length = 466
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 130 FFSHSSLFEGKTVLKSAYLNLNTKEFGEISGINXGVATAYDREKT 264
FF S+F T++ A++ + G + G N + + YD T
Sbjct: 28 FFCLMSIFSNYTIMNFAFICMKNDMQGAVQGANGTLQSIYDYTST 72
>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical protein
F07A11.6e protein.
Length = 2101
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 61 LEVLKDNVHNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAYLNL 192
+E LK+N N +DY N SSL E +T KSA +++
Sbjct: 1998 IENLKENDTNLKSHFIDYLINKKIAGISSLGEVETKFKSARVHV 2041
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical protein
F07A11.6c protein.
Length = 2392
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 61 LEVLKDNVHNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAYLNL 192
+E LK+N N +DY N SSL E +T KSA +++
Sbjct: 2289 IENLKENDTNLKSHFIDYLINKKIAGISSLGEVETKFKSARVHV 2332
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical protein
F07A11.6b protein.
Length = 2407
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 61 LEVLKDNVHNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAYLNL 192
+E LK+N N +DY N SSL E +T KSA +++
Sbjct: 2304 IENLKENDTNLKSHFIDYLINKKIAGISSLGEVETKFKSARVHV 2347
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 61 LEVLKDNVHNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAYLNL 192
+E LK+N N +DY N SSL E +T KSA +++
Sbjct: 2108 IENLKENDTNLKSHFIDYLINKKIAGISSLGEVETKFKSARVHV 2151
>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
protein C47E12.5b protein.
Length = 1028
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 172 KSAYLNLNTKEFGEISGINXGVATAYDREKTLXTLVDRMGYLNL 303
K+ +LNL+ F I T DRE TL +D G L L
Sbjct: 899 KNTFLNLSMPFFSSAEPIGAPKKTYMDREFTLWDRIDVQGPLTL 942
>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
protein C47E12.5a protein.
Length = 1113
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 172 KSAYLNLNTKEFGEISGINXGVATAYDREKTLXTLVDRMGYLNL 303
K+ +LNL+ F I T DRE TL +D G L L
Sbjct: 984 KNTFLNLSMPFFSSAEPIGAPKKTYMDREFTLWDRIDVQGPLTL 1027
>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 61 LEVLKDNVHNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAYLNL 192
+E LK+N N +DY N SSL E +T KSA +++
Sbjct: 1998 IENLKENDTNLKSHFIDYLINKKIAGISSLGEVETKFKSARVHV 2041
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 61 LEVLKDNVHNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAYLNL 192
+E LK+N N +DY N SSL E +T KSA +++
Sbjct: 2289 IENLKENDTNLKSHFIDYLINKKIAGISSLGEVETKFKSARVHV 2332
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 61 LEVLKDNVHNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAYLNL 192
+E LK+N N +DY N SSL E +T KSA +++
Sbjct: 2304 IENLKENDTNLKSHFIDYLINKKIAGISSLGEVETKFKSARVHV 2347
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 61 LEVLKDNVHNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAYLNL 192
+E LK+N N +DY N SSL E +T KSA +++
Sbjct: 2108 IENLKENDTNLKSHFIDYLINKKIAGISSLGEVETKFKSARVHV 2151
>Z66511-7|CAD57693.1| 567|Caenorhabditis elegans Hypothetical
protein F07A11.6d protein.
Length = 567
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 61 LEVLKDNVHNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAYLNL 192
+E LK+N N +DY N SSL E +T KSA +++
Sbjct: 464 IENLKENDTNLKSHFIDYLINKKIAGISSLGEVETKFKSARVHV 507
>Z47067-2|CAA87329.1| 498|Caenorhabditis elegans Hypothetical
protein C43C3.2 protein.
Length = 498
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = +3
Query: 66 SXKR*CAQCIPTRSRLPNQHTVFQSL---FFV 152
S R CA C P + R+ NQ TVF L FFV
Sbjct: 150 SIDRYCAVCHPLQVRVRNQRTVFVFLGIMFFV 181
>AF100672-1|AAC68997.2| 334|Caenorhabditis elegans Hypothetical
protein W05E7.2 protein.
Length = 334
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/75 (21%), Positives = 33/75 (44%)
Frame = -2
Query: 270 TQRFFSIICSSYAXIDAGYFSELFSVKVQVSGFKNCFPFEQRRVTEKQCVGLVVDYELGC 91
T F+ ++ +SY G LF GF F + + + L++ + + C
Sbjct: 63 TNHFYKMVKTSYIIFTCGLLLVLF-------GFSLDIDFNDASIFSLKSIFLMLLFLITC 115
Query: 90 IVHIIF*XFQFLVPV 46
I+++I F +L+ +
Sbjct: 116 ILYVISEVFNYLISI 130
>U62639-1|AAD09364.1| 925|Caenorhabditis elegans lr protein.
Length = 925
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 43 VHGNQELEVLKDNVHNASQLVVDYQTNTLFFSHSS 147
V N + VL++NV S + VD+ +FF+ S
Sbjct: 453 VSDNGLMRVLRENVIGVSNVAVDWIGGNVFFTQKS 487
>U62281-1|AAD09363.1| 925|Caenorhabditis elegans lipoprotein
receptor precursor protein.
Length = 925
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 43 VHGNQELEVLKDNVHNASQLVVDYQTNTLFFSHSS 147
V N + VL++NV S + VD+ +FF+ S
Sbjct: 453 VSDNGLMRVLRENVIGVSNVAVDWIGGNVFFTQKS 487
>AF185706-1|AAD56241.1| 925|Caenorhabditis elegans yolk receptor
RME-2 protein.
Length = 925
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 43 VHGNQELEVLKDNVHNASQLVVDYQTNTLFFSHSS 147
V N + VL++NV S + VD+ +FF+ S
Sbjct: 453 VSDNGLMRVLRENVIGVSNVAVDWIGGNVFFTQKS 487
>AF036703-1|AAB88554.3| 925|Caenorhabditis elegans Receptor
mediated endocytosis protein2 protein.
Length = 925
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 43 VHGNQELEVLKDNVHNASQLVVDYQTNTLFFSHSS 147
V N + VL++NV S + VD+ +FF+ S
Sbjct: 453 VSDNGLMRVLRENVIGVSNVAVDWIGGNVFFTQKS 487
>AC091125-6|AAK27886.3| 474|Caenorhabditis elegans Hypothetical
protein Y67D2.2 protein.
Length = 474
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2
Query: 285 PVHQGTQRFFSIICSSYAXIDAGYF 211
P+H F + S+YA ID G F
Sbjct: 369 PIHPSQAAIFGDLASNYALIDGGSF 393
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,740,925
Number of Sequences: 27780
Number of extensions: 114306
Number of successful extensions: 353
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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