Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20860
         (343 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   1.0  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    23   1.0  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   1.0  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   1.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   3.1  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   5.4  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    20   7.2  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    20   7.2  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    20   7.2  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +2

Query: 245 HMIEKKRXVPWWTGWDI 295
           +M+E     PW+ GW +
Sbjct: 200 NMLEPSPKTPWYKGWKV 216


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +2

Query: 245 HMIEKKRXVPWWTGWDI 295
           +M+E    +PW+ GW +
Sbjct: 127 NMLEVSSKMPWFKGWTV 143


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +2

Query: 245 HMIEKKRXVPWWTGWDI 295
           +M+E    +PW+ GW +
Sbjct: 143 NMLEVSSKMPWFKGWTV 159


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +2

Query: 245 HMIEKKRXVPWWTGWDI 295
           +M+E    +PW+ GW +
Sbjct: 200 NMLEVSSKMPWFKGWTV 216


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 52  NQELEVLKDNV 84
           NQE E++KDN+
Sbjct: 208 NQEYEIMKDNL 218


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +1

Query: 112 YQTNTLFFSHSSLFEGKTVLKSAYLNLNTKEFGEISGIN 228
           Y  +T  FS+    E     + +   LNT+ FG++   N
Sbjct: 279 YYVDTEQFSNPQYEENNVQYEGSQDILNTQSFGKVVSKN 317


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 3   NYESDNXDNYNCFSSR 50
           NY+  N +NYN ++ +
Sbjct: 88  NYKYSNYNNYNNYNKK 103


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 3   NYESDNXDNYN 35
           NY ++N +NYN
Sbjct: 95  NYNNNNYNNYN 105


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 3   NYESDNXDNYN 35
           NY ++N +NYN
Sbjct: 332 NYNNNNYNNYN 342



 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 3   NYESDNXDNYNCFSS 47
           NY+  N +NYN +++
Sbjct: 321 NYKYSNYNNYNNYNN 335



 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 3   NYESDNXDNYNCFSSR 50
           NY + N +NYN ++ +
Sbjct: 329 NYNNYNNNNYNNYNKK 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,990
Number of Sequences: 438
Number of extensions: 1440
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)