Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20860
         (343 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14170.1 68415.m01578 methylmalonate-semialdehyde dehydrogena...    29   0.61 
At3g50190.1 68416.m05488 expressed protein contains Pfam profile...    26   5.7  
At2g34260.2 68415.m04192 transducin family protein / WD-40 repea...    26   5.7  
At2g34260.1 68415.m04191 transducin family protein / WD-40 repea...    26   5.7  
At4g00330.1 68417.m00042 protein kinase family protein contains ...    25   10.0 
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial...    25   10.0 

>At2g14170.1 68415.m01578 methylmalonate-semialdehyde dehydrogenase,
           putative similar to methylmalonate-semialdehyde
           dehydrogenase [acylating], mitochondrial precursor
           (MMSDH) [Rattus norvegicus] SWISS-PROT:Q02253
          Length = 607

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +1

Query: 64  EVLKDNVHNASQLVVDYQTNTLFFSHSSLFEGKTVLKSAYLNLNTKEFGE-ISGINXGVA 240
           E+++ N+   +  +   Q  TL  SH  +F G  V++ A   + T + GE +  ++ GV 
Sbjct: 184 ELIRKNMDKLAMNITTEQGKTLKDSHGDIFRGLEVVEHA-CGMATLQMGEYLPNVSNGVD 242

Query: 241 TAYDRE 258
           T   RE
Sbjct: 243 TYSIRE 248


>At3g50190.1 68416.m05488 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 463

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 6/29 (20%)
 Frame = -3

Query: 110 STTSWDALC----TLSFXTS--NSWFP*T 42
           +TTSWD LC     LSF  S  NS+FP T
Sbjct: 89  ATTSWDKLCIYRVPLSFQKSDKNSYFPHT 117


>At2g34260.2 68415.m04192 transducin family protein / WD-40 repeat
           family protein similar to Vegetatible incompatibility
           protein HET-E-1 (SP:Q00808) {Podospora anserina}
          Length = 296

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +1

Query: 109 DYQTNTLFFSHSSLFEGKTVLKSAYLNLNTKEFGEISGINXGVAT 243
           DY    L  SH   F G T   S     N +E  E S +N G A+
Sbjct: 205 DYPIEDLALSHDKKFLGSTAHDSMLKLWNLEEILEGSNVNSGNAS 249


>At2g34260.1 68415.m04191 transducin family protein / WD-40 repeat
           family protein similar to Vegetatible incompatibility
           protein HET-E-1 (SP:Q00808) {Podospora anserina}
          Length = 353

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +1

Query: 109 DYQTNTLFFSHSSLFEGKTVLKSAYLNLNTKEFGEISGINXGVAT 243
           DY    L  SH   F G T   S     N +E  E S +N G A+
Sbjct: 262 DYPIEDLALSHDKKFLGSTAHDSMLKLWNLEEILEGSNVNSGNAS 306


>At4g00330.1 68417.m00042 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 411

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 82  VHNASQ-LVVDYQTNTLFFSHSSLFEGKTVLKSAYLNLNT 198
           VHN  + LVV+Y  N     H    EGKT+  +  L++ T
Sbjct: 187 VHNDEKILVVEYVANGTLRDHLDCKEGKTLDMATRLDIAT 226


>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
           putative very strong similarity to SP|P23413 ATP
           synthase alpha chain, mitochondrial (EC 3.6.3.14)
           {Brassica campestris}; contains Pfam profiles PF00006:
           ATP synthase alpha/beta family nucleotide-binding
           domain, PF00306: ATP synthase ab C terminal, PF02874:
           ATP synthase alpha/beta family beta-barrel domain
          Length = 777

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 142 SSLFEGKTVLKSAYLNLNTKEFGEISGINXGVATAY 249
           ++LFE +  +++ Y N    E G +  +  G+A  Y
Sbjct: 281 TNLFESR--IRNFYANFQVDEIGRVVSVGDGIAQVY 314


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,306,531
Number of Sequences: 28952
Number of extensions: 104699
Number of successful extensions: 221
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)