Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20857
(512 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 29 0.41
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 27 1.6
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 26 2.9
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc... 26 2.9
SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha... 25 5.0
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 25 5.0
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 25 5.0
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 5.0
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb... 25 5.0
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 25 5.0
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c... 25 5.0
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 25 6.7
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 25 8.8
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 29.1 bits (62), Expect = 0.41
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 200 MYCAESSRGYGGFTSLTVPMEDLSSVTT 283
M C +S + FTSL +P++D+S V +
Sbjct: 240 MTCGRTSTTFAPFTSLAIPIDDVSHVVS 267
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 27.1 bits (57), Expect = 1.6
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -3
Query: 285 EVVTELKSSIGTVSEVKPPYPRDDSAQYMMMPSVTGVAALIFSD 154
++ EL++ +GTVSE+ P D + + SV+ A LI SD
Sbjct: 258 QLAEELQTKLGTVSELVESVPNDVAEVQRRLSSVS-TALLIDSD 300
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 26.2 bits (55), Expect = 2.9
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 271 FRYDLGS-GSTPVVLTSDRPLPANQWIDIQIARLADSVSMKINLVRSFERRLDRPA 435
FRYD S V S P A IDI+I + + K++++ S RLDRPA
Sbjct: 151 FRYDPSSIRFHDVTEISLSPESAKVGIDIRI--IGNDAGEKLSILSSTLARLDRPA 204
>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 364
Score = 26.2 bits (55), Expect = 2.9
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -2
Query: 277 NGTQVFHWNGQ*GEAAVSSRRLGAVHDDAVCHWSGCPD 164
NGT + WN + GE RR G H AVC + PD
Sbjct: 196 NGTLIRIWNSETGEKICEFRR-GYQH-TAVCQLAFSPD 231
>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 5.0
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = -3
Query: 276 TELKSSIGTVSEVKPPYPRDDSAQYMMMPSVTGVAAL---IFSDIFMERDGGGALIARNA 106
T +KS +G +S+ P Y D+S + + T A+ FSD+ + ++ +
Sbjct: 27 TVVKSEMGALSKAYPTYSLDESFSFAPIRESTVSRAMTRRYFSDLDKYAESDIVIVGAGS 86
Query: 105 LPVKAGYAI 79
+ A Y I
Sbjct: 87 AGLTAAYYI 95
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.4 bits (53), Expect = 5.0
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 279 RPRIRKHSRGAYK*QAIAREPMDRHSDRPPRGFRLHEDQLSTQLR-ETFG*TG*KPPVRD 455
RPR R+ ++ +RE R +RP R R ++D LR + G + PP R+
Sbjct: 48 RPRRRRRDESDFRRHRESRERSYREDERPRRE-RRYDDYEPRSLRYSSVGRSRSPPPSRE 106
Query: 456 SDV 464
V
Sbjct: 107 RSV 109
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.4 bits (53), Expect = 5.0
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = -2
Query: 475 SAHRTSESRTGGFQPVYPNVS 413
SA+RT +SR+ F+P++ N++
Sbjct: 386 SAYRTDKSRSVAFRPLFDNLT 406
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.4 bits (53), Expect = 5.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 502 VHNHGGIVDSAHRTSESRTGGFQPVYPNVS 413
++ HG +V+S+H T S T F+ N S
Sbjct: 119 INTHGTVVNSSHETIASATSLFENSSSNFS 148
>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 657
Score = 25.4 bits (53), Expect = 5.0
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = +1
Query: 343 WIDIQIARLADSVSMKINLVRSFERRLDRPAESLRFETPMFCGRSXRFHRGCEPQ 507
W IQ+++ + INLV ++ R L P CG ++R C Q
Sbjct: 476 WDVIQLSKAGAPLVKFINLVERYQSCFVRFIHRLVVNAPDLCGEWCDWYRHCLKQ 530
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 5.0
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -2
Query: 82 DQLLRLAVLACVRHGTSTPVTV 17
+ +L+L+++ CV+ G PVTV
Sbjct: 217 EDMLKLSLVGCVKEGIVHPVTV 238
>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 5.0
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -2
Query: 493 HGGIVDSAHRTSESRTGGFQPVYPNVSRSCVLS*SSW 383
H G AHR ++ +T F+P++ + +++ S W
Sbjct: 422 HIGTTGMAHRKADVKTFEFRPLHAQRRANVIVTVSGW 458
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 25.0 bits (52), Expect = 6.7
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 289 SGSTPVVLTSDRPLPANQWIDIQIARLADSVSMKINLVRSFERRLDRPAESLRFETP 459
+ S PV T RP P W D+ + + + S+ V + E + +E+ F TP
Sbjct: 170 TNSPPVYHTVLRPTPETLWQDLCLLSESFANSLSDEAVLTLESNILLASEAPLFLTP 226
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 24.6 bits (51), Expect = 8.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 252 TVSEVKPPYPRDDSAQYM 199
T+S VKPP P DS ++
Sbjct: 221 TISSVKPPSPNSDSKFFL 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,097,272
Number of Sequences: 5004
Number of extensions: 39271
Number of successful extensions: 135
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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