Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20857
(512 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0137 + 14153603-14153629,14154136-14154586,14155066-141552... 31 0.41
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704 29 2.9
01_05_0622 + 23766226-23766835,23767025-23767356,23767516-23767626 29 2.9
07_01_0060 - 445619-445739,446026-446182,446274-446365,446516-44... 28 5.1
03_03_0054 + 14115511-14115515,14115844-14115921,14116004-141160... 28 5.1
02_05_1158 - 34550049-34551241,34551354-34551521,34551847-345522... 28 5.1
02_03_0294 - 17378157-17378208,17378433-17378512,17378594-173787... 28 5.1
01_06_1448 - 37434159-37434242,37434875-37434968,37435077-374352... 28 5.1
06_01_0593 + 4279988-4281325 27 6.7
01_06_1569 - 38304077-38304873,38304956-38305498,38305582-38305708 27 6.7
08_02_1402 - 26786011-26786128,26786263-26786516,26787505-267877... 27 8.8
07_03_1018 + 23326465-23326493,23326679-23327465 27 8.8
06_03_1460 - 30312640-30313116,30313457-30313708,30313808-303139... 27 8.8
06_03_0727 + 23909924-23910091,23911054-23911185,23911533-239117... 27 8.8
04_03_0372 + 15068405-15070000 27 8.8
02_05_0649 + 30612084-30612464,30613288-30613386,30613786-306140... 27 8.8
02_02_0317 + 8893593-8894207 27 8.8
01_01_0955 - 7494486-7496327 27 8.8
>12_02_0137 +
14153603-14153629,14154136-14154586,14155066-14155260,
14155366-14155628,14155964-14156104,14156188-14156283,
14156672-14156749,14157134-14157194,14157324-14157511,
14158441-14158569
Length = 542
Score = 31.5 bits (68), Expect = 0.41
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +2
Query: 65 ETKQLIAYPAFTGSAFLAINAPPPSRSMKMSLKIRAATPVTDGIIMYCAESSR 223
ET +A A SA +A+ +PPP L++ AA V G+++ E R
Sbjct: 118 ETIAAVAKSAQARSAAVALASPPPGWVQGEDLRLNAAAAVASGVVLGLHEDRR 170
>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
Length = 748
Score = 28.7 bits (61), Expect = 2.9
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = +2
Query: 2 CTETVDGYRCACPMSHTGK----NCETK--QLIAYPAFTGSAFLAINAPPPSRSMKMSLK 163
C T G+RC+CP TG CE K QL + A S +A+ S + + K
Sbjct: 318 CINTPGGFRCSCPDKTTGNAYFGTCEAKKSQLGVHIAIGVSIGIALLVIIMSSAYMIQQK 377
Query: 164 IRAAT 178
R AT
Sbjct: 378 RRLAT 382
>01_05_0622 + 23766226-23766835,23767025-23767356,23767516-23767626
Length = 350
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +1
Query: 265 LEFRYDLGSGSTPVVLTSDRPLPANQWIDIQIARLADSVSMKINLVRSFERRLDRPAE 438
L+ RY+L SGS PV LT L +++D+ R++ S+ + +++ + D P E
Sbjct: 156 LQLRYNLFSGSIPVQLTK---LENLRYLDLAYNRISGSIPPTLGGLKAMIQGGDIPEE 210
>07_01_0060 -
445619-445739,446026-446182,446274-446365,446516-446580,
447052-447117,447707-447838,448125-448298,449025-449183,
449297-449384,449492-449573,449757-449874,449959-450162
Length = 485
Score = 27.9 bits (59), Expect = 5.1
Identities = 22/84 (26%), Positives = 37/84 (44%)
Frame = -3
Query: 303 GSASGSEVVTELKSSIGTVSEVKPPYPRDDSAQYMMMPSVTGVAALIFSDIFMERDGGGA 124
G+ S S + ++ + E + YP D Y+ + GV ++ + I ERD G
Sbjct: 108 GAYSDSRGIPGIRKEVAEFIERRDGYPSDPELIYLTDGASKGVMQMLNTIIRNERD--GI 165
Query: 123 LIARNALPVKAGYAISCFVSQFLP 52
L+ P+ + AIS F +P
Sbjct: 166 LVPVPQYPLYSA-AISLFGGSLVP 188
>03_03_0054 +
14115511-14115515,14115844-14115921,14116004-14116078,
14116295-14116374,14117141-14117175,14117362-14117530,
14117849-14118129
Length = 240
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 52 RQELRDEATDRVPSFHGERIPSYQRPAAVPFHEDVAKDQGSHSS 183
+Q L DE + GE IP + + V EDV GSH S
Sbjct: 2 QQILMDECNPSLDILDGESIPHGVQTSPVAMEEDVPLMVGSHDS 45
>02_05_1158 -
34550049-34551241,34551354-34551521,34551847-34552231,
34552245-34552772
Length = 757
Score = 27.9 bits (59), Expect = 5.1
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +2
Query: 2 CTETVDGYRCACPMSHTG 55
CT T+ GY C CP G
Sbjct: 321 CTNTIGGYTCLCPRGTIG 338
>02_03_0294 -
17378157-17378208,17378433-17378512,17378594-17378764,
17379836-17379940,17381251-17381307
Length = 154
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -3
Query: 390 LH-GDGIREAGDLNVDPLVRGQWPVTCKHHGSA 295
LH GDG + GD ++R WP C G+A
Sbjct: 74 LHMGDGDKAYGDAYTCRMMRPDWPKACYRQGAA 106
>01_06_1448 -
37434159-37434242,37434875-37434968,37435077-37435250,
37435536-37435627,37435947-37436056,37437274-37437349,
37437445-37437537,37437617-37437817
Length = 307
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -3
Query: 300 SASGSEVVTELKSSIGTVSEVKPPYPRDDSAQYMMMPSV 184
+A+G V+ E ++ VS+ P Y DD++ + S+
Sbjct: 26 AAAGGHVIVEWNVAVSVVSDCLPSYTSDDNSAIVATDSI 64
>06_01_0593 + 4279988-4281325
Length = 445
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -3
Query: 327 WPVTCKHHGSA-SGSEVVTELKSSIGTVSEVKPPYPR 220
W CK G A +G+E T L + + + PP PR
Sbjct: 261 WRCACKARGLAVAGTEAATRLYMTADARTRLHPPLPR 297
>01_06_1569 - 38304077-38304873,38304956-38305498,38305582-38305708
Length = 488
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +2
Query: 119 INAPPPSRSMKMSLKIRAATPVTDGIIMYCAESSRGYGGF 238
I APPPS S M + VT M C S GY F
Sbjct: 273 IRAPPPSESAVMKRATVVSVAVTTVFYMLC--GSMGYAAF 310
>08_02_1402 -
26786011-26786128,26786263-26786516,26787505-26787732,
26788920-26789759
Length = 479
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +2
Query: 206 CAESSRGYGGF--TSLTVPMEDLSSVTTSDPEALPWCLQVTGHC 331
CA+ G GG +L VP+E S + A W L + G C
Sbjct: 83 CADCDTGCGGDDGAALRVPVEGFSGCPAAAELAASWGLDLPGGC 126
>07_03_1018 + 23326465-23326493,23326679-23327465
Length = 271
Score = 27.1 bits (57), Expect = 8.8
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 176 TPVTDGIIMYCAESSRGYGGFTSLTVPMEDLSSVTTSDPEALPWC-LQVTG 325
+P T+G+++ ES+ LT + DL VTT LP C L V G
Sbjct: 13 SPSTEGLVLLLHESTHVARLLNPLTHQLTDLPPVTTLLDLLLPLCDLSVDG 63
>06_03_1460 -
30312640-30313116,30313457-30313708,30313808-30313938,
30314037-30314322
Length = 381
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -3
Query: 450 EPEAFSRSIQTSLEAAY*VDLHGDGIREAGDLNVDPL 340
E EAF S+ ++ AA +L+G G R+ G +NV P+
Sbjct: 206 EVEAFYTSLISNYSAAI-TELYGMGARKFGIINVGPV 241
>06_03_0727 +
23909924-23910091,23911054-23911185,23911533-23911797,
23911893-23911909
Length = 193
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/62 (24%), Positives = 26/62 (41%)
Frame = +2
Query: 125 APPPSRSMKMSLKIRAATPVTDGIIMYCAESSRGYGGFTSLTVPMEDLSSVTTSDPEALP 304
+P P ++ + + V D + A + + Y GF L V ME+L + S +
Sbjct: 12 SPEPLSPLRELIDVPTVVYVADEDPKFAALADQAYAGFPFLFVTMEELYCLQRSSNNVIL 71
Query: 305 WC 310
C
Sbjct: 72 HC 73
>04_03_0372 + 15068405-15070000
Length = 531
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 240 VKPPYPRDDSAQYMMMPSVTGVAA--LIFSDIFMERDGGGA 124
++PP+PR+ +P G A + +F+ DGGGA
Sbjct: 159 LRPPHPRESVQLLPPLPPPPGGGAGKHVVERVFLPEDGGGA 199
>02_05_0649 +
30612084-30612464,30613288-30613386,30613786-30614049,
30614180-30614548
Length = 370
Score = 27.1 bits (57), Expect = 8.8
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = +1
Query: 280 DLGSGSTPVVLTSDRPL----PANQWIDIQIARLADSVSMKINLVRSFERRLDRPAESLR 447
D+ G + L PL PA D + +LAD V+ + + FE+ + ++
Sbjct: 92 DIPPGDVLIALPGRLPLRLRRPAGA-ADAVLVQLADQVNKRCRFLLEFEKEVKHKLGTVP 150
Query: 448 FETPMFCGR 474
E FCG+
Sbjct: 151 LEDHPFCGQ 159
>02_02_0317 + 8893593-8894207
Length = 204
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +1
Query: 418 RLDRPAESLRFETPMFCGRSXRFHRGCEPQP 510
R RPA R P CG R+ R P P
Sbjct: 4 RRPRPAAGTRIHVPQPCGGEIRWERHWRPDP 34
>01_01_0955 - 7494486-7496327
Length = 613
Score = 27.1 bits (57), Expect = 8.8
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -2
Query: 487 GIVDSAHRTSESRTGGFQPVYPNVSRSCVLS*SSWRRNPRGGRSECRSIGS 335
G+ ++ R+ E RTGG + PNV R L +W + RG S + G+
Sbjct: 286 GVSEADERSWEQRTGGGSSLLPNVQRG--LQNFTWSQ-ARGLNSHQQKFGN 333
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,664,657
Number of Sequences: 37544
Number of extensions: 333015
Number of successful extensions: 1126
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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