Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20857
         (512 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18380.1 68415.m02141 zinc finger (GATA type) family protein        30   0.80 
At3g07160.1 68416.m00853 glycosyl transferase family 48 protein ...    29   1.8  
At1g77620.1 68414.m09037 expressed protein                             28   3.2  
At4g27460.1 68417.m03946 CBS domain-containing protein                 27   5.6  
At4g02060.1 68417.m00276 prolifera protein (PRL) / DNA replicati...    27   5.6  
At4g27080.1 68417.m03893 thioredoxin family protein contains Pfa...    27   7.4  
At3g30300.1 68416.m03826 expressed protein contains Pfam PF03138...    27   7.4  
At2g34350.1 68415.m04204 nodulin-related weak similarity to nodu...    27   7.4  
At2g30880.1 68415.m03763 pleckstrin homology (PH) domain-contain...    27   7.4  
At4g38400.1 68417.m05428 expansin family protein (EXPL2) contain...    27   9.8  
At4g16920.1 68417.m02552 disease resistance protein (TIR-NBS-LRR...    27   9.8  
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi...    27   9.8  

>At2g18380.1 68415.m02141 zinc finger (GATA type) family protein 
          Length = 207

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -2

Query: 466 RTSESRTGGFQPVYPNVSRSC-VLS*SSWRRNPRGGRSECRSIGSR 332
           +TS  + GG     P    SC   S   WR  P+G +S C + G R
Sbjct: 76  KTSSYKKGGVAHSLPRRCASCDTTSTPLWRNGPKGPKSLCNACGIR 121


>At3g07160.1 68416.m00853 glycosyl transferase family 48 protein
            similar to glucan synthase GB:AAD11794 [Filobasidiella
            neoformans var. neoformans]
          Length = 1931

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +2

Query: 44   SHTGKNCETKQLIAYPAFTGSAFLAINAPPPSRSMKMSLKIRAATPVTDGIIMY 205
            +H  +N E ++ + +  FT S F+ +   PP +S++  L     TP    +++Y
Sbjct: 1062 AHVPRNLEARRRLQF--FTNSLFMDV---PPPKSVRKMLSFSVFTPYYSEVVLY 1110


>At1g77620.1 68414.m09037 expressed protein
          Length = 1151

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 38  PMSHTGKNCETKQLIAYPAFTGSAFLAINAPPPSRSMKMSLKIRA 172
           P   T K C TK  I      G   +A N  PP  ++++  K+RA
Sbjct: 73  PRKTTPKKCATKNGIVA---AGDQMIAANVSPPVPNLRLEAKLRA 114


>At4g27460.1 68417.m03946 CBS domain-containing protein 
          Length = 391

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 354 NVDPLVRGQWPVTCKHHGSASGSEVVTELKSSIGTVSEV 238
           NV  L  G+ P+ C    S+S S+ +  LKSS  T   V
Sbjct: 9   NVSDLCLGKPPLRCLSSSSSSVSDAIAALKSSEDTFLSV 47


>At4g02060.1 68417.m00276 prolifera protein (PRL) / DNA replication
           licensing factor Mcm7 (MCM7) identical to DNA
           replication licensing factor Mcm7 SP|P43299 PROLIFERA
           protein {Arabidopsis thaliana}; contains Pfam profile
           PF00493: MCM2/3/5 family
          Length = 716

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 469 HRTSESRTGGFQPVYPNVSRSCV 401
           H+T ES   GF+P+ PN+ R+ +
Sbjct: 536 HQTEESPALGFEPLEPNILRAYI 558


>At4g27080.1 68417.m03893 thioredoxin family protein contains Pfam
           PF00085: Thioredoxin
          Length = 480

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 82  RVPSFHGERIPSYQRPAAVPFHEDVAKDQGSHSSD 186
           + PS  G R+  Y R   VP +  V+   GSHS D
Sbjct: 287 KAPSTGGCRVEGYMRVKKVPGNLMVSARSGSHSFD 321


>At3g30300.1 68416.m03826 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'auxin-independent growth promoter -related'  based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 677

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 212 ESSRGYGGFTSLTVPMEDLSSVTTSDPEALPWCLQVTGHCPR 337
           ESS+    F+ L+ P+ + S +T + P +    L VT  CP+
Sbjct: 563 ESSKRSKAFSFLSHPVPECSCITRTHPVSNATNLGVTHRCPQ 604


>At2g34350.1 68415.m04204 nodulin-related weak similarity to
           nodule-specific protein Nlj70 [Lotus japonicus]
           GI:3329366
          Length = 525

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 347 IHWFAGNGLSLVSTTGVLPDP 285
           + WF G G   ++T+GV+P P
Sbjct: 92  LQWFVGYGFIWMATSGVIPRP 112


>At2g30880.1 68415.m03763 pleckstrin homology (PH) domain-containing
           protein contains Pfam profile PF00169: PH domain
          Length = 504

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = +1

Query: 307 VLTSDRPLPANQWIDIQI--ARLADSVSMKINLVRSFERRLDRPAESLRFETPMFCGRSX 480
           V+ +  P+  N+W DIQ   AR++D   +     R     LD P  S     P     S 
Sbjct: 439 VVNAQPPVGENEWNDIQATEARVSDVREISAETERDRRNSLDIPVVSPEPNVPRNDPPSE 498

Query: 481 RFH 489
            FH
Sbjct: 499 SFH 501


>At4g38400.1 68417.m05428 expansin family protein (EXPL2) contains
           Pfam profile: PF01357 pollen allergen; expansin-like
           gene, PMID:11641069, www.bio.psu.edu/expansins
          Length = 265

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 244 TDR-SNGRLEFRYDLGSGSTPVVLTSDRPLPAN 339
           TD+  NG L+FR+ + +G    ++ S R LPAN
Sbjct: 203 TDKVPNGALQFRFVVTAGYDGKMVWSQRVLPAN 235


>At4g16920.1 68417.m02552 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1304

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = +1

Query: 286 GSGSTPVVLTSDRPLPANQWIDIQIARLADSVSMKINLVRSFERRLDRPAE---SLRFET 456
           GSGS  +V+T DR L     ID+       S  + + ++  +    D P +   +L FE 
Sbjct: 309 GSGSRIIVITQDRQLLKAHEIDLVYEVKLPSQGLALQMISQYAFGKDSPPDDFKALAFEV 368

Query: 457 PMFCG 471
               G
Sbjct: 369 AELAG 373


>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
           PF00076 RNA recognition motif
          Length = 636

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +3

Query: 285 RIRKHSRGAYK*QAIAR-EPMDRHSDRPPRGFRLHE 389
           R R    G    +A AR  P  RHSDR PRG R  +
Sbjct: 557 RPRDSDEGRSSNRAPARGAPRGRHSDRAPRGGRFSD 592


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,702,172
Number of Sequences: 28952
Number of extensions: 233183
Number of successful extensions: 704
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)