Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20856
(357 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0871 + 8502396-8502417,8503606-8503732,8503891-8503990,850... 45 2e-05
04_04_1062 - 30498158-30498271,30498358-30498518,30498606-304989... 44 5e-05
06_03_0999 - 26752410-26752523,26752601-26752830,26752914-267531... 41 2e-04
05_01_0383 + 2990812-2990855,2991364-2991463,2991554-2991622,299... 36 0.012
03_03_0001 + 13611070-13611172,13611812-13611873,13612001-136120... 31 0.20
08_01_0102 - 735359-735370,735371-735455,735531-735616,735697-73... 27 5.7
05_07_0033 + 27197654-27198196,27198297-27198359,27198844-271989... 27 5.7
03_05_0155 - 21307001-21307239,21308217-21308320,21308564-213087... 27 5.7
08_02_0079 + 12005624-12005921,12006144-12006550,12007250-12007840 26 7.6
04_04_0680 - 27217563-27220088 26 7.6
>08_01_0871 +
8502396-8502417,8503606-8503732,8503891-8503990,
8504725-8504793,8504870-8505043,8505196-8505373,
8505462-8505594,8505702-8505864,8507031-8507181,
8507266-8507366,8507633-8507788,8508105-8508173,
8508256-8508324,8508403-8508540,8508639-8508767,
8509013-8509053,8510019-8510106,8510199-8510339,
8510428-8510553,8510671-8510736,8510994-8511291,
8511387-8511595,8511689-8511802
Length = 953
Score = 45.2 bits (102), Expect = 2e-05
Identities = 18/32 (56%), Positives = 24/32 (75%)
Frame = +2
Query: 260 KFYKGXSYIILRTTSDSRNNLSWDIHYWIGRE 355
KF+ G SYIIL+TT+ +L DIHYWIG++
Sbjct: 72 KFFMGDSYIILKTTALKNGSLRHDIHYWIGKD 103
Score = 30.7 bits (66), Expect = 0.35
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +3
Query: 192 TAGVQIWRIQNXEPIPV 242
T G++IWRI+N +P+P+
Sbjct: 49 TGGLEIWRIENFKPVPI 65
>04_04_1062 -
30498158-30498271,30498358-30498518,30498606-30498924,
30499412-30499477,30499601-30499726,30499821-30499961,
30500482-30500535,30501508-30501636,30501733-30501870,
30501993-30502061,30502135-30502203,30502468-30502623,
30503795-30503895,30503986-30504136,30504475-30504520,
30504539-30504637,30504796-30504928,30505018-30505195,
30505282-30505524,30505612-30505680,30505986-30506085,
30506898-30507007
Length = 923
Score = 43.6 bits (98), Expect = 5e-05
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +2
Query: 260 KFYKGXSYIILRTTSDSRNNLSWDIHYWIGRE 355
KFY G SYIIL+TT+ + D+HYW+G++
Sbjct: 59 KFYMGDSYIILKTTALKNGSFRHDLHYWLGKD 90
Score = 29.1 bits (62), Expect = 1.1
Identities = 8/16 (50%), Positives = 15/16 (93%)
Frame = +3
Query: 195 AGVQIWRIQNXEPIPV 242
+G+++WRI+N +P+PV
Sbjct: 37 SGLEVWRIENFKPVPV 52
>06_03_0999 -
26752410-26752523,26752601-26752830,26752914-26753169,
26753763-26753828,26753921-26754046,26754148-26754288,
26754377-26754387,26754523-26754670,26755326-26755454,
26755573-26755710,26755808-26755876,26755955-26756023,
26756565-26756720,26756885-26756985,26757068-26757215,
26757540-26757702,26757833-26757965,26758049-26758226,
26758330-26758572,26758664-26758732,26759063-26759187,
26759727-26759766,26760756-26760812,26762831-26762935
Length = 1004
Score = 41.1 bits (92), Expect = 2e-04
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +2
Query: 260 KFYKGXSYIILRTTSDSRNNLSWDIHYWIGRE 355
+F+ G SY+IL+TT+ + DIHYW+G++
Sbjct: 98 RFFTGDSYVILKTTALKNGSFRHDIHYWLGKD 129
>05_01_0383 +
2990812-2990855,2991364-2991463,2991554-2991622,
2991724-2991960,2992045-2992228,2992307-2992442,
2992529-2992691,2992958-2993108,2993154-2993278,
2993349-2993504,2993792-2993860,2993951-2994019,
2994127-2994264,2994626-2994773,2994856-2994866,
2995212-2995352,2995441-2995569,2995860-2995899,
2996020-2996348,2996902-2996919
Length = 818
Score = 35.5 bits (78), Expect = 0.012
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 260 KFYKGXSYIILRTTSDSRNNLSWDIHYWIGRE 355
KFY G +YIIL T ++HYW+G E
Sbjct: 37 KFYTGNTYIILSTVELKSGVRQHNVHYWVGEE 68
>03_03_0001 +
13611070-13611172,13611812-13611873,13612001-13612072,
13612158-13612394,13612473-13612650,13612731-13612863,
13613686-13613845,13613925-13614078,13614159-13614262,
13614354-13614512,13615399-13615467,13615543-13615611,
13615772-13615909,13616044-13616124,13616805-13616933,
13617717-13617864,13618007-13618017,13618094-13618234,
13618314-13618439,13619164-13619220,13619355-13619453,
13619540-13619762,13620236-13620480,13621325-13621438
Length = 1003
Score = 31.5 bits (68), Expect = 0.20
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 254 LXKFYKGXSYIILRTTSDSRNNLSWDIHYWIGRE 355
L KFY G YI+L T + + YWIG++
Sbjct: 418 LGKFYSGDCYIVLYTYHSGDKREEFYLTYWIGKD 451
>08_01_0102 -
735359-735370,735371-735455,735531-735616,735697-735779,
736790-737048,737132-737300,738554-738698,738782-739004
Length = 353
Score = 26.6 bits (56), Expect = 5.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 223 FCILHICTPAVLPTLAK 173
FCI H C +LP+LA+
Sbjct: 302 FCIFHACVGFILPSLAR 318
>05_07_0033 +
27197654-27198196,27198297-27198359,27198844-27198993,
27199079-27199150
Length = 275
Score = 26.6 bits (56), Expect = 5.7
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = -3
Query: 244 ATGIGSKFCILHICTPAVLPTLAKA-GWTLALSRAFLSDSDVIGPLIS*GLVAVRAQTDP 68
A G +LH PA LP +AK G+++AL+R +++ I A+R P
Sbjct: 119 AAAAGGGQALLH--PPAPLPVVAKKRGFSVALTR-----EEIVADFI-----AIRGTAPP 166
Query: 67 RKTKRRHEKMIFILKHVY 14
R+ K+R + L +Y
Sbjct: 167 RRPKKRPRAVRLELDRLY 184
>03_05_0155 -
21307001-21307239,21308217-21308320,21308564-21308772,
21308773-21308838,21308933-21308997,21309716-21309942,
21310156-21310269,21310515-21310522,21310964-21311053,
21311167-21311359,21312934-21313024,21313364-21313496,
21314756-21314896,21315017-21315078,21315159-21315246,
21315523-21315952,21316067-21316173
Length = 788
Score = 26.6 bits (56), Expect = 5.7
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 160 KSIRLLPMSAEQPVCKYGEYRTXNQYPLLXRTXKILQRXFIHH 288
K I LL + + P C++G T PLL + + R F+H+
Sbjct: 661 KDIDLL-QTKDGPFCRHGLTLTFENQPLLAGSKHVKVRNFLHN 702
>08_02_0079 + 12005624-12005921,12006144-12006550,12007250-12007840
Length = 431
Score = 26.2 bits (55), Expect = 7.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 240 RVLVXSSVFSIFAHRLFCRHWQKP 169
+VL+ +S +F HR C W+ P
Sbjct: 189 KVLMFNSRVKLFGHRKLCSKWEGP 212
>04_04_0680 - 27217563-27220088
Length = 841
Score = 26.2 bits (55), Expect = 7.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 193 VLPTLAKAGWTLALSRAFLSDSDVIGP 113
VLP + G+ + S+AF SDS+ GP
Sbjct: 237 VLPWRFQVGFKRSFSKAFCSDSESSGP 263
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,843,787
Number of Sequences: 37544
Number of extensions: 179946
Number of successful extensions: 465
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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